Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00113 ATGGCGGTTTCTCTGATTTTTCTCTTTGCAGAATGGGTCTCTGCTACGACTGTAACTTTTTACAACGAATGCAGCCACCCAGTATGGCCGGGTATCCAGCCAAGTGCCGGAAAACCCATCGTAGCTCGCGGCGGTTTCTCTCTCCGACCAAAAAAGGCTTTCTCCCTCAGTCTCCCTTCCCTCTGGTCTGGCCGCTTCTGGGGCCGTCACGGATGCTCCTTCGACTCCACAGGTAAAGGAAAATGTGCCACTGGAGACTGCGGCGGTTCCCTCTTCTGCAGCGGCCTCGGCGGTACTCCTCCGGCGACTCTAGCGGAAATCACCCTGGGCAACGACCAGGACTTCTACGACGTCAGCCTGGTGGATGGCTACAACCTAGCCATCTCCATCACGCCGGTGAAAGGCTCCGGCAAGTGCAGCTATGCCGGCTGCGTGAGTGACCTGAATACGATATGCCCGGTGGGTCTGCAAGTTAGATCTCACGTTAACGAACAAGTGATCGCCTGTAAAAGCGCTTGTTTCGCATTTAACTCGCCAAGATACTGCTGCACCGGAAGGTTCGGCAGTCCTCAGTCGTGTAAACCGACGGCGTACTCAAGGATTTTCAAGGCGGCTTGCCCGAAAGCTTATTCCTACGCTTATGATGATCCGACTAGCATTGCTACTTGTACAGGCGGAAACTATTTGGTCACTTTTTGCCCCCGCCATCACTAG 714 54.48 MAVSLIFLFAEWVSATTVTFYNECSHPVWPGIQPSAGKPIVARGGFSLRPKKAFSLSLPSLWSGRFWGRHGCSFDSTGKGKCATGDCGGSLFCSGLGGTPPATLAEITLGNDQDFYDVSLVDGYNLAISITPVKGSGKCSYAGCVSDLNTICPVGLQVRSHVNEQVIACKSACFAFNSPRYCCTGRFGSPQSCKPTAYSRIFKAACPKAYSYAYDDPTSIATCTGGNYLVTFCPRHH 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2656664 2657377 - BLOR07361 Blo16g00113 71304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00113 237 PANTHER OS03G0233200 PROTEIN 10 235 IPR001938 -
Blo16g00113 237 ProSiteProfiles Thaumatin family profile. 15 236 IPR001938 -
Blo16g00113 237 SMART tha2 18 234 IPR001938 -
Blo16g00113 237 Pfam Thaumatin family 22 234 IPR001938 -
Blo16g00113 237 ProSitePatterns Thaumatin family signature. 78 93 IPR017949 -
Blo16g00113 237 PIRSF PR5 1 237 IPR001938 -
Blo16g00113 237 SUPERFAMILY Osmotin, thaumatin-like protein 16 235 IPR037176 -
Blo16g00113 237 Gene3D Thaumatin 16 234 IPR037176 -
Blo16g00113 237 PANTHER THAUMATIN-LIKE PROTEIN 10 235 - -
Blo16g00113 237 CDD TLP-PA 17 233 - -
Blo16g00113 237 PRINTS Pathogenesis-related protein signature 78 107 IPR001938 -
Blo16g00113 237 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Blo16g00113 237 PRINTS Pathogenesis-related protein signature 224 233 IPR001938 -
Blo16g00113 237 PRINTS Pathogenesis-related protein signature 65 76 IPR001938 -
Blo16g00113 237 PRINTS Pathogenesis-related protein signature 17 29 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00113 - - - csv:101219392 429.483
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00849 Blo16g00113 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01173 Blo-Chr7:31606779 Blo16g00113 Blo-Chr16:2656664 2.78E-80 dispersed
Blo16g00113 Blo-Chr16:2656664 Blo18g00825 Blo-Chr18:24351434 8.07E-81 dispersed
Blo17g00349 Blo-Chr17:3677244 Blo16g00113 Blo-Chr16:2656664 2.57E-73 transposed
Blo16g00113 Blo-Chr16:2656664 Blo04g00849 Blo-Chr4:9311617 1.03E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g213 Blo04g00849 Blo16g00113 . . . Bpe13g00376 . . Cmo13g01030 Cmo18g00053 . . . . . Cpe20g00148 . . . . . . . . . . . . . . . . . . . Lsi02g00229 Csa01g00710 Chy12g01400 Cme12g01834 . . Bda11g01787 . . . Bma03g00919 . Sed08g1361 . . Cma13g00995 Cma18g00070 Car13g00828 Car18g00061 Cpe09g01116 . Bhi08g01289 Tan05g2196 Cmetu04g1577 Lac10g0286 Hepe07g2357 . . Cla04g01051 Cam04g1094 Cec01g1609 Cco01g1655 Clacu04g1120 Cmu04g1104 Cre01g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001931 3 2 2 2 1 2 2 2 2 3 2 2 4 2 2 4 2 0 4 2 2 2 2 2 2 2 2 3 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00113 Blo_Chr16 FPKM 6.947791 7.256392 18.60392 17.911551 5.650848 5.419444 5.639525 0.369194 0.737996 0.656739