Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00126 ATGGTAGATATTGAAGAGGAGATTCGAGCGCTACAGCTTGACTCGGCAGACGACAATAATGGGGTCGTAAATCCCGATGAGTCAAGGGCAGAAGTTGATAAATCTGATGATATGGAGGAAGATTTGATAGATCAAGCCCCTGCCAAATCAATTGATTCTCATCCTACCTTTGTACAAGAAAAAGGTAATATTGTAGTGAAAGAGGACTTCCCCGCTGAAGAAAAGGAAATCTCTCATCTGAAAGAAGAGTTAAATGAGGCAATGGAGTTGGATAAAAAGAAACACTTAAATGTTGTCTTTATTGGTCATGTTGATGCGGGTAAATCCACTATTGGAGGTCAAATACTTTTTCTTAGTGGTAAGATAGATGATCGTACGATCCAAAAGTACGAAAGAGAAGCAAAAGAGAAAAGCAGAGAAAGCTGGTATATGGCCTATATTATGGACACCAACGAGGAGGAGAGAGTTAAGGGGATAACTGTGGAAGTTGGAAGAGCATATTTCGAAACAGCATCTACAAGATTTACAATTCTTGATGCTCCAACGGCGGATGGCTTGATGAGGGGTGGCTGGAGCCGTTCTGTGATGGAGGAAGAGACATGGTCGAAAGATGTTTTGGAGAAGATGCAAGCCCCGCCTAAGGACCTAGCGATTCCGATAATATCGTCTTTAGAATTGGCAGCAGTAGATGGAATTTTGTTTGGGTTTCTAACAAGATATGAGTGTATGGCAGCACAGATGAAGGCATTCTTCGATTCAATAGGGCAACTTTGGAAGAAGGCGAGTGTTGTTTTCTTCAAGGAAAAAAAATCATGGTTGTATATGTCGATGATAAACCCTATCAGGAAGGGTCACAAAAGTTATGTTCCAAATATGATCAGTGGCGCATCCCAGGCTGATATTGGAGTGCTGGTAATTTCTGCTCGCAAAGGAGAATTCGAAACAGGATATGAGAGGGGTGGACAAACCCGTGAACATGTGCTTCTTGCAAAAACATTGGGCGTGTCTAAGCTGCTAGTTGTAGTTAATAAGATGGACGATCCATCTGTGAATTGGTCAAAGGAAAGGTATGATGAAATAGAATCCAAGATGGTTCCCTTCCTTAGGTCGTCAGGCTTCAATGTGAAGAAAGATGTCCAATTCCTTCCGATATCTGGTCTCCTTGGATCAAACATGAAAACGAGAATAGATAAAAAAACATGTCAATGGTGGGATGGTCCCTGCTTGTTTGAAGTTCTTGATGTAATTGAAGGCCCTGTAAGAGATCCGAAAGGTCCATTTAGGATGCCTATAATTGACAAATTTAAAGACATGGGAACAACGGTGATGGGCAAAGTTGAATCTGGCAGTGTGGGTGAGGGTGATTCTTTGTTAATTATGCCGAACAAGGTTCAAGTAAAAGTTGTTGCTATAAGCTGTGATGAAAACAAAGTTTCACGTGCTGGACCTGGAGAAAATTTACGGGTTAGATTATCTGGTGTTGAGGAAGAGGACATATCGTCGGGATTTGTCTTGTCAAGTGCTGTGACACCAATACCAGCTGTTACTGAGTTTGTTGCACAGTTGCAGATTCTTGAATTGCTGGAAAATGCTATTTTTACTGCTGGATATAAAGCAGTCTTGCACATTCATTCTGTTGTTGAGGAATGTGAGATTTTGGAGCTTCTACAACAAATTGATCCAAAGACAAAGAAACCCATCAAGAAGAAAATTCTCTTTGTGAAGAATGGAGCCATTGTTGTGTGCCGAGTCCAGTTGGATTATGACATGTGTATGTGGATTTGTGTTCACCAGGTGAATAACTTAATATGCATCGAGAAATTTTCTGATTTTGCACAGCTTGGAAGATTCACTCTTCGCACAGAAGGAAAGACAGTTGCAGTGGGAAAGGTCACTGATCTTGCATCTTCAAGTGCTTAG 1920 41.2 MVDIEEEIRALQLDSADDNNGVVNPDESRAEVDKSDDMEEDLIDQAPAKSIDSHPTFVQEKGNIVVKEDFPAEEKEISHLKEELNEAMELDKKKHLNVVFIGHVDAGKSTIGGQILFLSGKIDDRTIQKYEREAKEKSRESWYMAYIMDTNEEERVKGITVEVGRAYFETASTRFTILDAPTADGLMRGGWSRSVMEEETWSKDVLEKMQAPPKDLAIPIISSLELAAVDGILFGFLTRYECMAAQMKAFFDSIGQLWKKASVVFFKEKKSWLYMSMINPIRKGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVSKLLVVVNKMDDPSVNWSKERYDEIESKMVPFLRSSGFNVKKDVQFLPISGLLGSNMKTRIDKKTCQWWDGPCLFEVLDVIEGPVRDPKGPFRMPIIDKFKDMGTTVMGKVESGSVGEGDSLLIMPNKVQVKVVAISCDENKVSRAGPGENLRVRLSGVEEEDISSGFVLSSAVTPIPAVTEFVAQLQILELLENAIFTAGYKAVLHIHSVVEECEILELLQQIDPKTKKPIKKKILFVKNGAIVVCRVQLDYDMCMWICVHQVNNLICIEKFSDFAQLGRFTLRTEGKTVAVGKVTDLASSSA 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2862452 2878734 + BLOR07374 Blo16g00126 71317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00126 639 CDD EF1_alpha 97 420 - -
Blo16g00126 639 Gene3D - 187 284 IPR029039 -
Blo16g00126 639 Gene3D Translation factors 424 508 - -
Blo16g00126 639 MobiDBLite consensus disorder prediction 13 37 - -
Blo16g00126 639 Pfam Elongation factor Tu C-terminal domain 512 634 IPR004160 -
Blo16g00126 639 Gene3D - 74 186 IPR027417 -
Blo16g00126 639 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 516 634 IPR009001 -
Blo16g00126 639 CDD eRF3_C_III 513 634 - -
Blo16g00126 639 CDD eRF3_II 426 507 - -
Blo16g00126 639 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 93 424 IPR000795 GO:0003924|GO:0005525
Blo16g00126 639 PANTHER BNAA06G12300D PROTEIN 2 181 - -
Blo16g00126 639 PANTHER BNAA06G12300D PROTEIN 284 630 - -
Blo16g00126 639 SUPERFAMILY Flavoproteins 202 260 IPR029039 -
Blo16g00126 639 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 149 164 IPR031157 -
Blo16g00126 639 Gene3D Translation factors 514 635 - -
Blo16g00126 639 Coils Coil 70 90 - -
Blo16g00126 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 181 IPR027417 -
Blo16g00126 639 Gene3D - 285 416 IPR027417 -
Blo16g00126 639 PANTHER TRANSLATION FACTOR 2 181 - -
Blo16g00126 639 PANTHER TRANSLATION FACTOR 284 630 - -
Blo16g00126 639 Pfam Elongation factor Tu GTP binding domain 284 407 IPR000795 GO:0003924|GO:0005525
Blo16g00126 639 Pfam Elongation factor Tu GTP binding domain 93 181 IPR000795 GO:0003924|GO:0005525
Blo16g00126 639 SUPERFAMILY Translation proteins 419 508 IPR009000 -
Blo16g00126 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 430 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00126 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - mnt:21405534 581.637
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00839 Blo16g00126 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00126 Blo-Chr16:2862452 Blo16g00682 Blo-Chr16:26437721 1.62E-17 dispersed
Blo08g00452 Blo-Chr8:9639233 Blo16g00126 Blo-Chr16:2862452 1.14E-06 transposed
Blo13g00256 Blo-Chr13:11656077 Blo16g00126 Blo-Chr16:2862452 1.58E-10 transposed
Blo17g00480 Blo-Chr17:6860854 Blo16g00126 Blo-Chr16:2862452 1.87E-07 transposed
Blo16g00126 Blo-Chr16:2862452 Blo04g00839 Blo-Chr4:9082701 9.85E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00126 Blo_Chr16 FPKM 0.981441 0.950777 1.416466 1.307138 4.170542 5.257064 4.789769 0.0 0.187192 0.225396