Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00132 ATGCGGTTTCGTCTGGCTGTTTTGTGCATCTTCTTCATCGGTTGGAGTTTTCGTCTCCGTCCATCTCTCTGCGACTCCAGTGAAGATGAGTCTGGTACTTGTTCCAAGTTCAGCTGCGGAAACGTGACAAACCTTTCGTATCCTTTTCGGACAAGTAATCAGTCACAAAACTGCGGTAGGCAAGAGTTGGAGCTTAATTGCCATGGCGAAGATCATACAGCCTACTTCACCATGAAAATAAACGCTCTGGATTATCGTGTTCTCAGCATCAACAAAACCACTCTCACAATGAAAATCGCGAGGTCAGATTTGTACGACAGTCCTTGCACGGCAAATTTCACGAACACGTCCTTGAATTCTCTCTTGCATTATTCCCCCAACATCCAGAATCTTACAGTATTCTACAAATGCCGCAACGTACCACTGAACTCGAACGAAACTCTCTCCAGAAACAGATTCGATTGTGCCTCCTATGGCGGCGGGACAGACAATTACTTCTTTGATGATGAGTCGATAGTAGAAACTTTGAAATCCGAACTCAGGGCTTGCGAAAATAACATTACAGTTCCGTCGTTTTCAGAGGCTGACGACGAAATCGAGAATGGAACGGAATTTATCACGAATGCTTTTCACGGCGGTTTTTCGGTGACTTACGAAAAACTGGACATATCCTTCGCCTGTAACGCTTGTGAGAAGTCGGGTGGGTCATGCGGGTCGAACAGTTCGTTTCCATTCCTCTGCTTTTGCTCGGGTCAAATTCCTCAGCCTTCTATGGCATGTCCAGCTCGAGGTGTTTGCTCCGGTGTTGGGGGTGTACTCATAATGTGCATTGTCTTTTTCATCAGGGAATACCGCAAGAACAAAAGATCAACAGACCCATTTACTGCATTTAGAAGCATTTCCTCCTATTTCTCCTCAAAAAACCCAGTTGAGAAGGAAGGTATCTATGGTGGTGTTCGTCTATTTTCATACACTGAACTTGAAGCAGCTACCAACAAATTTGATTCCTCTAAAGAACTCGGAGATGGAGGCTTTGGCACCGTATATTATGGGAAACTTCAGGATGGGCGAGCTGTAGCAGTCAAGCGCTTGTATGAAAACAATTACAAGAGAGTTGAGCAGTTCAGGAATGAAGTTGAAATTCTCACTCGCCTACGCCACAAGAATCTTGTTTCTTTATACGGGTGTACATCTCGACAGTGTCGCGAACTCATGCTCGTTTATGAATACATATCCAATGGCACAGTCGCCGACCATCTTCACGGCGAAAGAGCGAAACCAGGTTGTGAGCTTCCATGGTCGACTCGGATGAAAATTGCCATAGAAACTGCAAGTGCATTGGTCTATCTCCATGCTTCTGGTGTCATTCATCGCGACGTCAAAACAAGCAACATTCTCCTCGACAACAATTATAATGTTAAAGTTGCAGATTTTGGGCTATCTCGTCCTTTCCCAACCAATGTTTCTCATATCTCAACTGCTCCGCAAGGAACTCCTGGCTATCTTGATCCGGAGTACAGCGAATGTTACCAGTTAACTGAAAAGAGCGATGTTTACAGTTTCGGAGTCGTCTTAGTGGAACTTATATCGTCCAAGCCTGCTGTAGACATCACAAGGCATCGACACGAAATTAATTTATCGACCATGGCTATTAATAAGATCCAGAATAGTGCATTAAACGAGCTCGTTGATCCTCATCTCGGGTTTGAGACGGACGAAAGAGTAAGAAAAATGATCGGCGATGTAGCAGAGTTGGCATTTCAGTGTTTGCAGAGTGTGAAGGACACAAGGCCGTCCATGGCTGATATTCTTCAGACTTTGAATCGCATAGAGAACGAAGATTGCTGTAAAGAAAAGGCAACAGTCGAAGAGCTGCCGGAGAACATTGACGAGAATTTTTCACCCGATTCCGTTGCTGTCCGATGGTTTAGCACGTCTACAACACCAAATACCAGCAGTTAA 1962 44.75 MRFRLAVLCIFFIGWSFRLRPSLCDSSEDESGTCSKFSCGNVTNLSYPFRTSNQSQNCGRQELELNCHGEDHTAYFTMKINALDYRVLSINKTTLTMKIARSDLYDSPCTANFTNTSLNSLLHYSPNIQNLTVFYKCRNVPLNSNETLSRNRFDCASYGGGTDNYFFDDESIVETLKSELRACENNITVPSFSEADDEIENGTEFITNAFHGGFSVTYEKLDISFACNACEKSGGSCGSNSSFPFLCFCSGQIPQPSMACPARGVCSGVGGVLIMCIVFFIREYRKNKRSTDPFTAFRSISSYFSSKNPVEKEGIYGGVRLFSYTELEAATNKFDSSKELGDGGFGTVYYGKLQDGRAVAVKRLYENNYKRVEQFRNEVEILTRLRHKNLVSLYGCTSRQCRELMLVYEYISNGTVADHLHGERAKPGCELPWSTRMKIAIETASALVYLHASGVIHRDVKTSNILLDNNYNVKVADFGLSRPFPTNVSHISTAPQGTPGYLDPEYSECYQLTEKSDVYSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNSALNELVDPHLGFETDERVRKMIGDVAELAFQCLQSVKDTRPSMADILQTLNRIENEDCCKEKATVEELPENIDENFSPDSVAVRWFSTSTTPNTSS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2986830 2994023 + BLOR07380 Blo16g00132 71323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00132 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 17 644 - -
Blo16g00132 653 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00132 653 Pfam Wall-associated receptor kinase galacturonan-binding 34 100 IPR025287 GO:0030247
Blo16g00132 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Blo16g00132 653 Pfam Protein kinase domain 335 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00132 653 SMART serkin_6 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00132 653 Gene3D Phosphorylase Kinase; domain 1 304 410 - -
Blo16g00132 653 SUPERFAMILY Protein kinase-like (PK-like) 316 625 IPR011009 -
Blo16g00132 653 CDD STKc_IRAK 340 610 - -
Blo16g00132 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 644 IPR044652 -
Blo16g00132 653 Gene3D Transferase(Phosphotransferase) domain 1 411 633 - -
Blo16g00132 653 Pfam Wall-associated receptor kinase C-terminal 163 251 IPR032872 -
Blo16g00132 653 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00132 - - - jre:109010677 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00359 Blo-Chr11:3039905 Blo16g00132 Blo-Chr16:2986830 8.95E-08 dispersed
Blo16g00132 Blo-Chr16:2986830 Blo18g00827 Blo-Chr18:24383066 2.41E-80 dispersed
Blo16g00132 Blo-Chr16:2986830 Blo18g00445 Blo-Chr18:4935945 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g288 . Blo16g00132 . . . . . . Cmo13g01053 . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0561 . . Lsi02g00197 Csa01g00685 Chy12g01425 Cme12g01863 . . . . . . . . . . . Cma13g01012 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84731 PF00069 Pkinase 2.40E-49 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00132 Blo_Chr16 FPKM 4.205986 0.0 0.0 0.0 8.851048 6.840619 8.003294 0.0 0.0 0.0