Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00136 ATGGCTTTTACGGCCAAGTTTTCGGAGTTTCAGCTGAGGAACTCGTTGTTTGTTACCTCAACCTCGCAGTCTATGTTCTCCTCTCATAAGTCGTCGTTTTCAATTGTCAAGCCTGTTTTTTACGCACGAAAGATTTCAGAGCATAGTTTTAGCGAAACTTCGAAATCATCTCAGAAATCGAGAGATTCTCCTGCTCCTTGGCTCTCAAAGTGGCCGTCTGGAGATTCTATGGTTGAATTAGTGGATCGCAGAGTCAATGAGAAAGTTGTGGAATCGAAAAGTGAAAGTCGAACGGTTCGAGCGGCTCGGGCGGAAGCTCAGACTCGTTATGTCCATAAAGACAAGGGACAAAGTGCGATTGATAGAATTGTTTTGCGGTTGCGAAATCTAGGGTTAGGATCGGAAGATGAGGATGAAAATGAAGAGGGTGATGAAGGAAGTGGAAATGGATTGGAGGATAAGGAAGAGGTGCCAGTGACTGGGGATGAGAAACTTGGGGATTTATTGCAGCGAGAGTGGATTCGACCTGATAGCATATTGACCGAGGACGATGATGACATGGTATTACCATGGGAGCGAGAGGATGAAGAAGTCCAAGAGGAGGAAGGAGGAAGGGGGTCAAAGAGAAGGGTGGTGAAAGCTCCAACATTGGCGGAATTAACGATTGAGGATGAGGAACTAAGACGATTGAGAAGAATTGGGATGTTTGTTAGAGAGAGGATCAATGTGCCGAAAGCAGGGCTCACTCGGGAAGTTTTAGAAAAGATTCATGGGAAGTGGAGAAAGGAAGAATTAGTAAGACTCAAGTTTCATGAGGTGCTTGCACATGACATGAAAACAGCGCATGAACTTGTTGAGGTTGGTTTTCGTTTATTGATGTGA 882 44.9 MAFTAKFSEFQLRNSLFVTSTSQSMFSSHKSSFSIVKPVFYARKISEHSFSETSKSSQKSRDSPAPWLSKWPSGDSMVELVDRRVNEKVVESKSESRTVRAARAEAQTRYVHKDKGQSAIDRIVLRLRNLGLGSEDEDENEEGDEGSGNGLEDKEEVPVTGDEKLGDLLQREWIRPDSILTEDDDDMVLPWEREDEEVQEEEGGRGSKRRVVKAPTLAELTIEDEELRRLRRIGMFVRERINVPKAGLTREVLEKIHGKWRKEELVRLKFHEVLAHDMKTAHELVEVGFRLLM 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3089301 3090182 + BLOR07384 Blo16g00136 71327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00136 293 Pfam CRS1 / YhbY (CRM) domain 223 287 IPR001890 GO:0003723
Blo16g00136 293 MobiDBLite consensus disorder prediction 135 149 - -
Blo16g00136 293 ProSiteProfiles CRM domain profile. 220 293 IPR001890 GO:0003723
Blo16g00136 293 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 286 - -
Blo16g00136 293 SUPERFAMILY YhbY-like 221 286 IPR035920 -
Blo16g00136 293 MobiDBLite consensus disorder prediction 133 162 - -
Blo16g00136 293 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 286 IPR045278 GO:0000375|GO:0003729
Blo16g00136 293 Gene3D - 220 289 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00136 - - - csv:101219948 269.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00136 Blo-Chr16:3089301 Blo18g00355 Blo-Chr18:3746690 8.78E-14 dispersed
Blo16g00136 Blo-Chr16:3089301 Blo07g00020 Blo-Chr7:384872 4.07E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00136 Blo_Chr16 FPKM 1.945146 2.187007 0.734884 0.837624 2.22119 2.563282 2.775521 2.445731 2.312133 2.308866