Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00138 ATGGCGTCGTCTATAGTTTCTTCAGCCACTGTGGCAGCCATTAACAGGGCTACGCCAGTTCAGTCTAACATGGTTGCTCCATTCACCGGCCTGAAATCCTCCGCCGCCTTCCCCGTCACCCGCAAGCCCAGCTCCGACTTCTCCTCCCTCCCCAGCAACGGCGGCCGAGTGTGGCCTCCGCTGGGGAAGAAGAAGTTCGAGACTCTTTCATATCTTAATGATCTGAGCAGAGAGGAATTAATTAAACAAGTTGCTTATCTTCTCCGCAATGGATGGATTGCCTGCATTGAGTTCGAGTTGGAGAAGGGATTCGTTTACCGTGAGCACCACCGTTCGCCGGGATACTACGACGGCCGGTACTGGACCATGTGGAAGCTACCCATGTATGGCTGCACCGACCCTTCTCAGGTTTTGAACGAAGTGGACGAGTGCGTCAAAGAGTATCCAAGTAGCTTCGTCCGAATCATCGGATTCGACAATGTCCGCCAAGTGCAATGCATCAGTTTCATCGCCGTCAAGCCTGCTGTCTAT 531 53.11 MASSIVSSATVAAINRATPVQSNMVAPFTGLKSSAAFPVTRKPSSDFSSLPSNGGRVWPPLGKKKFETLSYLNDLSREELIKQVAYLLRNGWIACIEFELEKGFVYREHHRSPGYYDGRYWTMWKLPMYGCTDPSQVLNEVDECVKEYPSSFVRIIGFDNVRQVQCISFIAVKPAVY 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3111198 3111966 - BLOR07386 Blo16g00138 71329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00138 177 Gene3D Ribulose bisphosphate carboxylase, small subunit 56 177 IPR036385 -
Blo16g00138 177 Pfam Ribulose bisphosphate carboxylase, small chain 66 174 IPR000894 -
Blo16g00138 177 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 46 IPR024680 -
Blo16g00138 177 SUPERFAMILY RuBisCO, small subunit 56 174 IPR036385 -
Blo16g00138 177 SMART RuBisCO_small_2_a 65 174 IPR000894 -
Blo16g00138 177 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 175 IPR024681 -
Blo16g00138 177 PRINTS RuBisCO small subunit signature 114 143 IPR024681 -
Blo16g00138 177 PRINTS RuBisCO small subunit signature 64 90 IPR024681 -
Blo16g00138 177 PRINTS RuBisCO small subunit signature 21 38 IPR024681 -
Blo16g00138 177 PRINTS RuBisCO small subunit signature 148 174 IPR024681 -
Blo16g00138 177 PRINTS RuBisCO small subunit signature 92 107 IPR024681 -
Blo16g00138 177 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN A, CHLOROPLASTIC 1 175 - -
Blo16g00138 177 CDD RuBisCO_small 64 174 IPR000894 -
Blo16g00138 177 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 64 175 IPR000894 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00138 K01602 rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] - egr:104425787 280.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00138 Blo-Chr16:3111198 Blo16g00139 Blo-Chr16:3140827 1.10E-131 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g324 . Blo16g00138 . . . Bpe13g00347 Bma06g00038 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0716 Cone16ag0580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006736 0 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00138 Blo_Chr16 FPKM 1.632184 0.0 0.0 0.308991 0.0 0.0 0.0 0.0 0.125368 0.0