Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00141 ATGGCTCAGATCTTTGAGTTTTTCGTTGTGTGTGGGATTGGACCAGAGATTAGGACTTTGGACGGCGACAAAGGCTTTCATGGATTCGGAGTTATGTACTTTCCATCTCTGCTCGATCAGTATCCTCCCTCAAATCACTCTCTCTATACTGATCCACCTCCTCAGCTCCCAACCTGTGTTCTACCAGCTGGAGTGGCGTTCTTCTCCTCGGGATTCGATCCCAACGATGCTTCTACTTTTCCACGTAGCTATCCTATAGTTTTAACTGAGGGCGATGGGTCAAAAATATATGTTAGCTGTATTTCTTTTAGAGATCCAGTGAGCGAGGATATTGCAGAAGCTTATCGCATACCACCAAATTCCTTTGCTGATAAATGTATCTGTCTTGTTTCTCACTCACCAAGCTTCCGAGCCCTTAGGAATGCATTGGAAGAGTTATTTGCTCTATGCTTTGATCCTAGTGGAAGTAGCAAACCGCTGTGGGATGTCATCTCCTATATGGTCTCCAAGGTTCCTTTGCCTACTCCTGGAAAGGACAGGGTTTTGTTTGCCATTGAGAATTGTCTACTTTCTGTTGAGGCTCCATCGAAGGACAGACTGCCCCACGCTGATATATCGTTTCAGCCACTTGTACAATGCTTAGACTTGGACAATTTAATTAAACTTTTCACATCTGTGTTGCTTGAAAGAAGGATTCTACTTCGATCAAACAAGTATACACTTTTAACTCATGTATCAGAGGCTATATGCCATTTAATTTATCCATTTAGGTGGCAGCATGTGTACATTCCATTACTCTTTTTCAGTGGAGTAGACTACATTGACGCTCCCACACCTTATATGATGGGTCTCCATTCGGGTGTGGACACTTCCTTTCTGGCAATAGATGGTGTCGTGGTTGTGGACCTTGATTATAATTGTATAACCACGACTGAGGAAATACCTCCTATTCCAGAACCAGAATTGAGCTCTCTCCGTGGTGAGATAATGAAGTTACTGTGTCCGAACGTTGTGGGCATAGATGAGATGAAGGCTGATTTATTCAGTTCATCTGAGCATTATTTCAAGGGTGTAAATAAGCCTTGGGGAGATGATCATGACCTTCAACTTAGGTTGATTTTTCTCAAGTTTTTTGCATCACTCTTAAGTGGCTATCGCAATTATATAGAAAATACTGCTATTCAAGTTTTCAACGCTCAAGCATTTCTGAAGAAGCGTTCTCGGTTCACTAATCAGCCGCCAGAACCCATGATTAGTCAATTCCTAGACTCACAAGGATTCTTGGATTATCTGGAGAGAGGTGTAGGTTCTGATCAGAACAATAATAATCTTCTGGACAAGTTACAAGATGCCATTGAAAGGGGTCAAAATCCTATTTCAATTTTTTCATCCTCTGTTGCTGAGCTTGAGATCACAACAATATCTGATCCTGATGCCACAACATCGGGTCTGGGTGCCAAATATACTTATGATAGGTTTCCCTCAAACATAAGAACGGAGGAGCAGAAAGAAAAGAGAAAGCAGATTCTTGCATCTGTCACTGGGGCTTTTGAATACTCAACAAAGCAAACTCCTAGTTCCCCTTCTTTGCTAATGGGTAAGGACTCCAAAATGGTAAGCCTTAGCCCAATGGAGAGAGCTGCAGAAAGAGATCGCATGGTTTTGGACATAAAAGTTAAGCTCCAGGGCTTGTGGCTACGCCTTCTTAAACTGGGAGCAACCGAGGATCCTCTTTCATCATTTGAATATGGCACAATCCTTGCTTTGATTGAATCTGATGCAGAGGGCATTGGTGGTAGCGGGTTTGTTGAATGTATAGGAGAACACATTAATTCTGGATGGATTTGTCAACTGACAGATGAACAGTTTATTGCAGTTAAAGAATTGCTGAAAACAGCAATTAGTCGTGCAACTTCTCGGAATGATATACCAACTATAAGAGATGCCCTGGAAGTTTCCGCTGAAATGTACAAGAAGGATCCAAATAATGTTTCTGACTACATCCAACGCCATCTCATTTCAATGTCAATTTGGGAGGAACTGAGGTTTTGGGAAGGATACTTTGAGTATTTGATGGACAGGTCATCTAACAAGTCAGCCAATTATGCTTCTCTAGTTTCTTCACAGCTAATAATTGCCGCTTCTCATATGGCTGGGTTAGGACTTCCTGACACTGATGTGTGGTACATGATTGAAACAATTGCAGAGAAAAACAACATCGGATACAAGCAGCTAATAAAACTCAGAGGATTCTTGTCTTATATCCAACAACTGCGAATGGGTTACTGGGGAATATCTTCTGCAAAGAGCCAATCCATGTCAGCTTATGGATTGCAATCTCCTCGTCCAAAAGATGCATCTGATGCGAATCAGCAAAATGTTGAGGCTTCTGGAAGGAGCTGGGTTCAGAGCATGTTCAGCAGGGATGCAACATCAAAGACAAATTCATTTGGCCGTGTTCGTGGATGGGCATCTGAGGGCCATGCTTCAGCTGCAACTGAGAATGGGACTTCTCACAAACAAGATATATCCAGTGCTGGACAGAAGAAAATCCAGACTAATGTTCGCATACTTAGGGGTCATAGCGGAGCTGTTACAGCACTTCATTGTGTAACTAAAAGAGAGGTGTGGGATCTTATAGGTGACCGTGAAGATGCAGGGTTCTTTATAAGTGGAAGCACAGATTGTTCGGTCAAACTATGGGATCCAAGCTTTCGTGGTTCTGAACTTCGAGGAACTCTGAAAGGACATACAGGATCTATCCGTGCAATAAGTTCCGATCGAGTAAAGATTGTATCTGGATCTGATGATCAGTCTATTATTGTATGGGATAAGCAAACTACTCAGCTTCTAGAAGAGCTGAAAGGCCATGACGCACAGGTCAGCTGTGTACGGATGCTCTCAGGTGAACGCGCTATAACTGCTGCTCATGATGGAACTGTGAAGATGTGGGATGTGAGAACTAATACTTGTGCGGCAACCGTTGGTCGCTGCACTAGTGCAGTTCTTTGCATGGAATATGATGATTCCACTGGGATCTTAGCTGCTGGTGGTAGAGATGCGATGGCTAACATCTGGGACATACGTTCTGGGAGGCAGATGCATAAGCTTTCAGGTCACACTAAATGGATTAGGTCAATCAGAATGGTTGGTGACACCCTAATTACTGGTAGTGATGATTGGACTGCTAGAATGTGGTCTGTTTCTCGAGGAACATGTGATGCTGTTCTAGCTTGCCATGCTGGCCCAATATTGTGTGTTGAGTATTCCACACTGGACAGAGGAATAATAACTGGTTCAAGTGATGGGCTGCTCCGATTTTGGGACAATGAGGATGGCGCAATAAGATGTGTGAAAAATGTAACCATCCATACTGGGGCTATATTATCCATCAATTCTGGTGAACACTGGTACGATGTATCTCGTCCGACCTCGAAAGAAAACGAATATGCAGTGGTGGGAGGAATGGCATTCTCAGGCTATGGGAAGCCACGATTAACATATAAAGTTTCTGGTATGAGAGTTTCCTCTGTTGCTGGTGGCTCAGCTTCCAGAGAAGAGTTGTTGGCGATGGAGAATAAAAAGGGCAAGCCTCCGCAGCAGCCGTGGCTTATTGTTGGTCTCGGAAACCCGGGGAAGAAGTACGACGGCACCCGCCATAATGTGGGTTTTGAAATGGTGGACACTATAGCTGAAGCTGAAGGGATTTCCGTGAGTAATGTTTCTTTCAAAGCCCTATTTGGAAAAGGTTTGGTTGGTGGTGTTCCCTTAATCCTGGCCAAACCACAGACTTTCATGAATTCAAGTGGTGAGTCTGTTGGTGCCATCGTTTCATATTATAAAATTCCATTGAAGCAAGTTCTTGTGGTTTTTGATGACTTAGATTTACCGTTCGGAAAATTGCGGCTTTTGCCAAAAGGAGGGCATGGAGGACATAATGGGATGAGGAGTATCATTGCACACTTGAAAGAAACCCGTGATTTTCCTCGTTTGAGAATTGGCATTGGTCGGCCTCCTGGAAAAATGGATCCTGTCAACTTCGTCCTTCGCCCTTTCAATAGACAAGAAAGGGAAGAGTTGGATTTTACACTTCAACGCGGCCTGGAAGCTGTCCGGATTCTTTTGGTGGAGGGGGTCAATAAAAGTGCAACATTTGTGAACAGTGCCAAATCCTTGGAACAACATGGTTAG 4191 43.5 MAQIFEFFVVCGIGPEIRTLDGDKGFHGFGVMYFPSLLDQYPPSNHSLYTDPPPQLPTCVLPAGVAFFSSGFDPNDASTFPRSYPIVLTEGDGSKIYVSCISFRDPVSEDIAEAYRIPPNSFADKCICLVSHSPSFRALRNALEELFALCFDPSGSSKPLWDVISYMVSKVPLPTPGKDRVLFAIENCLLSVEAPSKDRLPHADISFQPLVQCLDLDNLIKLFTSVLLERRILLRSNKYTLLTHVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSFLAIDGVVVVDLDYNCITTTEEIPPIPEPELSSLRGEIMKLLCPNVVGIDEMKADLFSSSEHYFKGVNKPWGDDHDLQLRLIFLKFFASLLSGYRNYIENTAIQVFNAQAFLKKRSRFTNQPPEPMISQFLDSQGFLDYLERGVGSDQNNNNLLDKLQDAIERGQNPISIFSSSVAELEITTISDPDATTSGLGAKYTYDRFPSNIRTEEQKEKRKQILASVTGAFEYSTKQTPSSPSLLMGKDSKMVSLSPMERAAERDRMVLDIKVKLQGLWLRLLKLGATEDPLSSFEYGTILALIESDAEGIGGSGFVECIGEHINSGWICQLTDEQFIAVKELLKTAISRATSRNDIPTIRDALEVSAEMYKKDPNNVSDYIQRHLISMSIWEELRFWEGYFEYLMDRSSNKSANYASLVSSQLIIAASHMAGLGLPDTDVWYMIETIAEKNNIGYKQLIKLRGFLSYIQQLRMGYWGISSAKSQSMSAYGLQSPRPKDASDANQQNVEASGRSWVQSMFSRDATSKTNSFGRVRGWASEGHASAATENGTSHKQDISSAGQKKIQTNVRILRGHSGAVTALHCVTKREVWDLIGDREDAGFFISGSTDCSVKLWDPSFRGSELRGTLKGHTGSIRAISSDRVKIVSGSDDQSIIVWDKQTTQLLEELKGHDAQVSCVRMLSGERAITAAHDGTVKMWDVRTNTCAATVGRCTSAVLCMEYDDSTGILAAGGRDAMANIWDIRSGRQMHKLSGHTKWIRSIRMVGDTLITGSDDWTARMWSVSRGTCDAVLACHAGPILCVEYSTLDRGIITGSSDGLLRFWDNEDGAIRCVKNVTIHTGAILSINSGEHWYDVSRPTSKENEYAVVGGMAFSGYGKPRLTYKVSGMRVSSVAGGSASREELLAMENKKGKPPQQPWLIVGLGNPGKKYDGTRHNVGFEMVDTIAEAEGISVSNVSFKALFGKGLVGGVPLILAKPQTFMNSSGESVGAIVSYYKIPLKQVLVVFDDLDLPFGKLRLLPKGGHGGHNGMRSIIAHLKETRDFPRLRIGIGRPPGKMDPVNFVLRPFNRQEREELDFTLQRGLEAVRILLVEGVNKSATFVNSAKSLEQHG 1396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3162143 3179487 + BLOR07389 Blo16g00141 71332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00141 1396 Gene3D - 201 387 IPR043153 -
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 944 - -
Blo16g00141 1396 SMART WD40_4 851 902 IPR001680 GO:0005515
Blo16g00141 1396 SMART WD40_4 907 944 IPR001680 GO:0005515
Blo16g00141 1396 SMART WD40_4 1030 1067 IPR001680 GO:0005515
Blo16g00141 1396 SMART WD40_4 988 1027 IPR001680 GO:0005515
Blo16g00141 1396 SMART WD40_4 947 985 IPR001680 GO:0005515
Blo16g00141 1396 SMART WD40_4 1070 1109 IPR001680 GO:0005515
Blo16g00141 1396 Pfam uDENN domain 35 103 IPR005113 -
Blo16g00141 1396 Gene3D - 824 970 IPR015943 GO:0005515
Blo16g00141 1396 Gene3D - 1 175 - -
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats profile. 999 1036 IPR001680 GO:0005515
Blo16g00141 1396 Gene3D - 1189 1389 IPR036416 GO:0004045
Blo16g00141 1396 Hamap Peptidyl-tRNA hydrolase [pth]. 1202 1380 IPR001328 GO:0004045
Blo16g00141 1396 Pfam Peptidyl-tRNA hydrolase 1204 1382 IPR001328 GO:0004045
Blo16g00141 1396 ProSitePatterns Trp-Asp (WD) repeats signature. 1014 1028 IPR019775 -
Blo16g00141 1396 Pfam WD domain, G-beta repeat 1072 1109 IPR001680 GO:0005515
Blo16g00141 1396 Pfam WD domain, G-beta repeat 853 902 IPR001680 GO:0005515
Blo16g00141 1396 Pfam WD domain, G-beta repeat 1032 1067 IPR001680 GO:0005515
Blo16g00141 1396 Pfam WD domain, G-beta repeat 949 985 IPR001680 GO:0005515
Blo16g00141 1396 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats profile. 1077 1109 IPR001680 GO:0005515
Blo16g00141 1396 PANTHER C-MYC PROMOTER BINDING PROTEIN 12 1138 - -
Blo16g00141 1396 SMART DENN_cls 122 306 IPR001194 -
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats profile. 1037 1076 IPR001680 GO:0005515
Blo16g00141 1396 SMART dDENN_cls 366 434 IPR005112 -
Blo16g00141 1396 Pfam DENN (AEX-3) domain 124 305 IPR001194 -
Blo16g00141 1396 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 1308 1318 IPR018171 GO:0004045
Blo16g00141 1396 PRINTS G protein beta WD-40 repeat signature 972 986 IPR020472 -
Blo16g00141 1396 PRINTS G protein beta WD-40 repeat signature 1096 1110 IPR020472 -
Blo16g00141 1396 PRINTS G protein beta WD-40 repeat signature 931 945 IPR020472 -
Blo16g00141 1396 CDD WD40 854 1131 - -
Blo16g00141 1396 SUPERFAMILY WD40 repeat-like 855 1123 IPR036322 GO:0005515
Blo16g00141 1396 SUPERFAMILY Peptidyl-tRNA hydrolase-like 1202 1387 IPR036416 GO:0004045
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats profile. 954 994 IPR001680 GO:0005515
Blo16g00141 1396 ProSitePatterns Trp-Asp (WD) repeats signature. 972 986 IPR019775 -
Blo16g00141 1396 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 12 1138 - -
Blo16g00141 1396 TIGRFAM pth: aminoacyl-tRNA hydrolase 1204 1382 IPR001328 GO:0004045
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 954 988 - -
Blo16g00141 1396 Gene3D - 971 1159 IPR015943 GO:0005515
Blo16g00141 1396 SMART uDENN_cls 1 104 IPR005113 -
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 953 IPR001680 GO:0005515
Blo16g00141 1396 ProSiteProfiles Tripartite DENN domain profile. 19 442 IPR037516 -
Blo16g00141 1396 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 1215 1228 IPR018171 GO:0004045
Blo16g00141 1396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1077 1109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00141 - - - mcha:111008717 1916.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00940 Blo-Chr3:35430684 Blo16g00141 Blo-Chr16:3162143 3.62E-65 dispersed
Blo16g00141 Blo-Chr16:3162143 Blo17g00426 Blo-Chr17:5070822 5.64E-60 dispersed
Blo16g00962 Blo-Chr16:37850569 Blo16g00141 Blo-Chr16:3162143 6.46E-10 dispersed
Blo18g00379 Blo-Chr18:4024994 Blo16g00141 Blo-Chr16:3162143 3.43E-10 dispersed
Blo16g00141 Blo-Chr16:3162143 Blo13g00615 Blo-Chr13:28573069 2.25E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g347 . Blo16g00141 . . . Bpe13g00341 Bma06g00002 . . Cmo18g00031 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00169 Csa01g00653 Chy12g01448 Cme12g01888 . . . Bda14g00913 . Bpe15g00544 Bma03g00889 . . . . . Cma18g00036 . Car18g00030 Cpe09g01144 . Bhi08g01217 Tan05g2282 . Lac10g0222 . . . Cla04g01104 Cam04g1157 Cec01g1667 Cco01g1713 Clacu04g1184 Cmu04g1164 Cre01g1462 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00141 Blo_Chr16 FPKM 5.0 5.185293 4.288244 3.897597 3.12081 3.602013 3.140584 6.496993 5.547527 7.412674