Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00145 ATGGCGGAAGTGGAAGAGAGCCCTCGCGTCTCGTCGAAGGAAGAAACCAAGAAGAAGCGGAAGAGAAAGAGGCCTGTTAGAGGATTTTCGTCTGCCAATGAAGGAGAATCAGAGTTCTGTAATCCAGGTTTGGAAGAAGATGAAGATGCGATTGGTGATCGATCAGAGAGAGAGAAGAAAAGCAAGAAGAAGGAGTTGAAGAAGAAGTCTAAGGCGGAGGATGCGGTGGAGGAGAAGCCGGATGAGGATGAGGATGATGACGAGAATCGGAATGAGGATAAGGTAGAAGTTAATGATGAAGTAGGAAAGGAGGAGGATAACGAAAAGGATAAGAAGAAGGTTAAGAGTAATGCATCGGGGATTATGAGCACGGTGTCTTTTTCTTCTCTTGAATTGTCTGAACACACAATTAGGGCCATTAAGGATATGGGATTCGAGCATATGACTCAGATACAATCTAGGGCCATACCTCCACTATTGCTTGGAAAAGATGTTCTTGGTGCTGCGAGAACTGGTTCAGGGAAAACTCTGGCTTTTCTAATCCCAGCTGTAGAGTTGCTATATCATATCCATTTTACTCCACGTAATGGAACAGGCGTTGTTGTAATATGCCCAACTAGGGAACTTGCAATGCAGACTCATGCTGTGGCAAAGGACCTTCTTAAGTATCACTCCCAGACACTCGGCCTTGTTATTGGTGGTAATGCTAGGCGAGGAGAAGCAGAACGAATTGTTAAAGGAGTTAATTTATTAGTAGCAACTCCTGGTCGACTTCTTGACCATCTTCAAAATACTAAGGGTTTTATATATAAAAACCTGAAGTGCCTTATGATTGATGAAGCTGATAGGATACTGGAAGCAAACTTTGAAGAAGAAATGAAGCAAATTATTAAGCTCCTTCCCAAGAATAGGCAGACTGCTTTATTTTCTGCCACTCAAACTCAAAAGGTTGAAGATCTTGCTCGCTTGTCATTCCAGACAACTCCTATTTATATTGACGTGGATGATGGACGAACCAAGGTCACAAATGAAGGTCTGCAGCAAGGCTATTGTGTTGTGCCAAGTGCTAGAAGATTTATTCTTCTATATTCCTTCTTGAAAAGGAATTTATCCAAGAAAGTCATGGTCTTCTTTTCCTCTTGTAACTCCGTCAAATTCCACTCAGACCTACTCAGATATATTCAGGTGGATTGCCTTGATATCCATGGAAAGCAAAAGCAGCAAAAGAGGACCAGTACTTTCTTTGAATTTTGCAAAGCTGAGAAGGGAATTTTACTGTGTACTGATGTTGCTGCACGTGGGCTTGACATTCCTTCTGTGGATTGGATTGTGCAATATGATCCCCCAGATGAGCCTAAGGAATACATACACCGAGTTGGTCGAACTGCTCGTGGTGAAGGAGGGAAAGGAAATGCCCTTCTTTTCTTGATTCCAGAGGAGTTGCAATTTCTTCGCTACCTAAAGGCAGCAAAGGTTCCTGTTAAAGAATATGAATTTAATGAAAAGAAGCTGGCTAATGTCCAGTCTCACTTGGAGAAGTTGGTGGGCAACAATTACTATTTGAACAAGTCGGCAAAAGATGCTTACAGATCATATCTATTAGCTTATAATTCCCATTCCATGAAAGATATCTTCAATGTTCACCGTCTTGATCTCCAGGGTGTGGCTAGTTCGTTCTGTTTTTCCAATCCTCCAAAGATCAATCTCAATATGGACAGCAATGCCTCTAAATTTAGGAAGAAAACACGCAATGTTGAAGGCAGACGACATGGATTCAGCGAGAGTAACCCTTATGGAAAAAGAGGTGAGGATGATAAGAGACAGTTTGTAAGGTAT 1836 41.94 MAEVEESPRVSSKEETKKKRKRKRPVRGFSSANEGESEFCNPGLEEDEDAIGDRSEREKKSKKKELKKKSKAEDAVEEKPDEDEDDDENRNEDKVEVNDEVGKEEDNEKDKKKVKSNASGIMSTVSFSSLELSEHTIRAIKDMGFEHMTQIQSRAIPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHIHFTPRNGTGVVVICPTRELAMQTHAVAKDLLKYHSQTLGLVIGGNARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLQQGYCVVPSARRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSDLLRYIQVDCLDIHGKQKQQKRTSTFFEFCKAEKGILLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYEFNEKKLANVQSHLEKLVGNNYYLNKSAKDAYRSYLLAYNSHSMKDIFNVHRLDLQGVASSFCFSNPPKINLNMDSNASKFRKKTRNVEGRRHGFSESNPYGKRGEDDKRQFVRY 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3232204 3236146 - BLOR07393 Blo16g00145 71336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00145 612 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 92 601 - -
Blo16g00145 612 MobiDBLite consensus disorder prediction 94 116 - -
Blo16g00145 612 CDD DEADc_DDX18 136 333 IPR044773 GO:0003724|GO:0005524
Blo16g00145 612 Pfam Domain of unknown function (DUF4217) 507 567 IPR025313 -
Blo16g00145 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 515 IPR001650 -
Blo16g00145 612 SMART DUF4217_3 506 569 IPR025313 -
Blo16g00145 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 480 IPR027417 -
Blo16g00145 612 MobiDBLite consensus disorder prediction 579 612 - -
Blo16g00145 612 CDD SF2_C_DEAD 346 476 - -
Blo16g00145 612 Pfam DEAD/DEAH box helicase 149 320 IPR011545 GO:0003676|GO:0005524
Blo16g00145 612 Pfam Helicase conserved C-terminal domain 362 465 IPR001650 -
Blo16g00145 612 Gene3D - 101 337 IPR027417 -
Blo16g00145 612 PANTHER RNA HELICASE 92 601 - -
Blo16g00145 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Blo16g00145 612 MobiDBLite consensus disorder prediction 1 117 - -
Blo16g00145 612 Gene3D - 342 586 IPR027417 -
Blo16g00145 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 331 IPR014001 -
Blo16g00145 612 SMART ultradead3 144 349 IPR014001 -
Blo16g00145 612 MobiDBLite consensus disorder prediction 77 93 - -
Blo16g00145 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 333 IPR027417 -
Blo16g00145 612 SMART helicmild6 385 466 IPR001650 -
Blo16g00145 612 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00145 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - vvi:100242258 909.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00216 Blo-Chr4:1678707 Blo16g00145 Blo-Chr16:3232204 3.92E-77 dispersed
Blo10g00825 Blo-Chr10:26084658 Blo16g00145 Blo-Chr16:3232204 4.31E-105 dispersed
Blo16g00145 Blo-Chr16:3232204 Blo16g00854 Blo-Chr16:35968974 3.82E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00145 Blo_Chr16 FPKM 30.818308 37.32003 51.056721 51.430355 27.65852 26.786119 27.836416 41.731182 37.704945 38.073528