Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00156 ATGGCGGTTGATTCAGATTCATCGTCTCCTTCCCCCAATAAACGCTTGAAGACCTTAGCCACGACCTCGACCTTCAATTCTCCGTTCAATGTCGACTCGAAAGCTAATAAACTGGAGAATTCTTCGCAAATCTGTGTTATTTGCTTGTCGGAAGATGGGAAAGCCGACGCAGGCCAGCTCGATTGCTGTGACCACTACTTTTGCTTTGTTTGTATTATCGAGTGGGGAAAGATCGAGTCTAAGTGCCCCTCGTGCAAGCGTAGATTTTCCACTATTTGCAGGCTCCCAATTGATGGTTCTCATCGACGTGTAGTTAAGATCCCTGTTCGAGACCAAGCGTACCATTCTTCTGAAAATCTATCTGGAGAACCTTATGATCCTTATGCCCACGTTCGATGTAATATATGTAATGGCATGGAAGATGATAGTCTTATGTTACTTTGTGATCTTTGTGATTCAGCTTCTCATACATATTGTGTTGGCTTGGGTACAACTGTTCCTGAAGGTGATTGGTTCTGTCGGGACTGCAACATAAATAGTAGGAATGATTCTGCCCGAAGTCAAACTGGTTTGGATAGGGATGATCGGATTTTAGCCACAAGTGTTGAGACTCGTCCTAGCATTCATGATATTGTGAGGGAGCCAAATAACCTTGGATTGGGGACAGTAATTGGAAGAGTACCCTCTTGTCCAAACAATAAGGCTACGAATTTAGTTACTTCGGACAGAAGCAATGTAAGTAATGAAAGCAGAACTTTGCATCGTTGTCGTAATATTCATACACATATAAGAGCTTTACGTGAAAATTGGCATGATTTGCGAAGAGGGTCATTGAGCTTTCCTTCAAGTTCATTAACAGATTGTAGCAATAAGAAAAGGTTGGAGGTCAACCCTTCAACTTCCACAAGTTGTCGGAATGCGGAAAGCTCAAAGGAAGACGGAAGCTCAGGTGATGTTGAGAAGGCTTGGAAGATGATGAAAATTGCCAAGGCAATATGTGAGAGGACGAGCCTCGTTAATCCGGCTATGGAAACTCCTCCTGGGATACAGTCTAATCCGAAAAATGCTTGTTCTACGAAGAAAAATTCTCCTGTTGTTGGAAATCAGCCAGGCAAACGTAAAGATCTGGTAAGAACTGCTGTAAGAAATCAGGGGTATTGGTCTTCGGTGAATGATGAGTGGAAACACAAATCTGTAGTGAAGGATGAGCATAATGGATGTCTGGTTGCAAGGAAGGAGAATTCAGAATCTAATAAAGGAAATCCACCAAATTCATCTCGTTCTGCTGAATATAAGGACGATTCATATCGAGAAAATGGAACTGGATCGTCAAGGAATAGTAAAATGAACCGCCCTGATGGAAATCACAGATCGGCAAAAGATGATGCTAATATCAAGGACACCAATATTCATGATGCCAAAAGTGAGATTCAATCCTTGGTGAAGATCAACTTAAAGCTTCTCAGCAGAGACAAAAGACTAGGAGTTGACACATTCAAGAAAGCTGCGAGGCTTGCGACCCACACGATCTTAGCAGCATGTGGTTTAGAGCCTTGGAAGCTGCACACTTCTCCGATCCCAAATTCCACTTGCAATCACGAAAAAGATATTCAGCAGAAGCGTCGGAAAGTGTCATTAATGCCAAATTGCTGTGAAGAATGCTTTTATGTAGTTGTGCAGGATATTGTCAAAGATGCAATGGAAGCGAAGCTTGGAAACAAGAATTCGAAGTTAGAGGAGGCCAATAACGTGTTATTGGAGATTCTAAATGAGCTGAAATTACTTCGCATTGCTTCCCGTTGTTACCCCAATGAAGGAACAAGCGGCAGATGTTCGGATTACAAAGGAAATGGGGTGTTGCCTCAGTTCACGAGGGAGGACAAAGGGTTTTTGAGCTTACAACACAGGATACTACGCAGAACTCTACGTTTGCTTGTTGCCAGCCTGCAGAACTTCATTCCGAGTTGGAATCCCAGGAACCGCCAGGGCTGA 1992 43.07 MAVDSDSSSPSPNKRLKTLATTSTFNSPFNVDSKANKLENSSQICVICLSEDGKADAGQLDCCDHYFCFVCIIEWGKIESKCPSCKRRFSTICRLPIDGSHRRVVKIPVRDQAYHSSENLSGEPYDPYAHVRCNICNGMEDDSLMLLCDLCDSASHTYCVGLGTTVPEGDWFCRDCNINSRNDSARSQTGLDRDDRILATSVETRPSIHDIVREPNNLGLGTVIGRVPSCPNNKATNLVTSDRSNVSNESRTLHRCRNIHTHIRALRENWHDLRRGSLSFPSSSLTDCSNKKRLEVNPSTSTSCRNAESSKEDGSSGDVEKAWKMMKIAKAICERTSLVNPAMETPPGIQSNPKNACSTKKNSPVVGNQPGKRKDLVRTAVRNQGYWSSVNDEWKHKSVVKDEHNGCLVARKENSESNKGNPPNSSRSAEYKDDSYRENGTGSSRNSKMNRPDGNHRSAKDDANIKDTNIHDAKSEIQSLVKINLKLLSRDKRLGVDTFKKAARLATHTILAACGLEPWKLHTSPIPNSTCNHEKDIQQKRRKVSLMPNCCEECFYVVVQDIVKDAMEAKLGNKNSKLEEANNVLLEILNELKLLRIASRCYPNEGTSGRCSDYKGNGVLPQFTREDKGFLSLQHRILRRTLRLLVASLQNFIPSWNPRNRQG 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3558556 3561702 + BLOR07404 Blo16g00156 71347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00156 663 ProSiteProfiles Zinc finger PHD-type profile. 130 179 IPR019787 -
Blo16g00156 663 MobiDBLite consensus disorder prediction 408 467 - -
Blo16g00156 663 Pfam PHD-finger 132 177 IPR019787 -
Blo16g00156 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 92 IPR013083 -
Blo16g00156 663 MobiDBLite consensus disorder prediction 291 310 - -
Blo16g00156 663 MobiDBLite consensus disorder prediction 343 376 - -
Blo16g00156 663 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Blo16g00156 663 MobiDBLite consensus disorder prediction 411 429 - -
Blo16g00156 663 MobiDBLite consensus disorder prediction 291 319 - -
Blo16g00156 663 Coils Coil 564 598 - -
Blo16g00156 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 199 IPR013083 -
Blo16g00156 663 PANTHER F18C1.6 PROTEIN 7 573 - -
Blo16g00156 663 SUPERFAMILY FYVE/PHD zinc finger 114 177 IPR011011 -
Blo16g00156 663 MobiDBLite consensus disorder prediction 450 467 - -
Blo16g00156 663 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 7 573 - -
Blo16g00156 663 ProSiteProfiles Zinc finger RING-type profile. 45 86 IPR001841 -
Blo16g00156 663 SMART PHD_3 132 177 IPR001965 -
Blo16g00156 663 SUPERFAMILY RING/U-box 33 92 - -
Blo16g00156 663 SMART ring_2 45 85 IPR001841 -
Blo16g00156 663 MobiDBLite consensus disorder prediction 343 366 - -
Blo16g00156 663 Pfam Zinc finger, C3HC4 type (RING finger) 45 85 IPR018957 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00156 - - - ming:122088893 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01057 Blo-Chr6:33941124 Blo16g00156 Blo-Chr16:3558556 1.03E-07 dispersed
Blo11g00526 Blo-Chr11:4873417 Blo16g00156 Blo-Chr16:3558556 7.00E-12 dispersed
Blo16g00156 Blo-Chr16:3558556 Blo10g00633 Blo-Chr10:19536681 2.19E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13373 PF00628 PHD 3.00E-10 CL0390 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00156 Blo_Chr16 FPKM 49.956989 40.975086 57.868237 53.911587 4.546606 5.102591 6.750534 27.394133 25.775114 24.140793