Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00175 ATGGAAGCTGAACGATCGTTTCAACATTTCTGCAAGCTCTGCAACAAAAGGTTCCGCTGTGGTAGATCTTTGGGAGGTCATATGAGGTCTCATTTGATGAACGCTGAACCTGAATTTAATGAAAAATTGAAGAGAGCAAAGCTTCGAGGTCTCAACAATGGCGGAATCAACACCAACAAGATGAAAATACTGGATTCGTCCACCTGCTCGGGATACGGCCTGAGAGAAAACCCGAAAAGAAATTCAAAACATAGCAATCAGGATTCAGACAATTCAATTCGAGGAAAGTTTTGCAGAGAATGTGGAAAAGGATTTCAGTCTTGGAAAGCTCTGTTTGGCCATATGAAATGCCACTCAGAAAAAGATAAAACCTCCATTAAAATGGAGGATCAAGAATCATGGAGCTTCGTGGATCAAAAGCTGATAAATGATAGCCAATCTGACAATGAATTTTCAGCTCCGAACAGGAAAAAGCGATCTAGCAGAAGAAGAATCAGGCAATCAAAAACTGCAACTTCTTCTTCTTTTTCAATCGCAAATGCGTCTTCTTCTGCTTCAGAAATTGATCAAGAACAGGAAGAGATTGCTTTGTGTTTGATTATGCTTTCCCGAGATATGGGTCATTGGGGTGGGATTAGTTCAATCGCAGAATCATCTGATAACAACTCCATTTTTTCCGAAATTCCGTCTTTTACTCGGAAGAATTTCGTCGAGAGTAAATTTGAGTTCGGTGAGATGGATTCCGGGAATCGGGATTTTATCGGGAAACAAACAGAATTCAAGAAGACCAAGTTCAAGAAGAAATCTGAGCATGACAACACATTCGGAATCATGAATTCTGCTACAAAATTGGGGAAGAACATCATCAATGAAGATCCAAAAATCGGATCGAAATATCAGAAAACATCAAAAATCCATCCCCCAGATTCTGAAAACTACAAAATTTCCAATAAAAGAAGCAAATTTGAGTGTTCTTCCTGCAGAAAAGTCTTCCACTCGTATCAAGCTCTCGGAGGTCATAAAGCCAGCCATAGAAAGATGAAAAGCTGCTTCAATTCGACAATGGAGATCGCAGAGAACAGCATCGAAGCCGAAAACGAAAACCAGATCGACCCAGAAATCAGTGTTTCTAAGAGCAAGAGAAAAATGCATGAATGTCCAATCTGCTTCAAGCTGTTCAGTTCAGGCCAAGCCTTGGGTGGCCATAAGAGATCACACTTGTTTGGATGCTCAGAAAAAATCCCAGAAATTCGAGAATTTATCGACCTTAATCTTCCCGCTCCTGCTGATGAAGAGAGCAACAACAACCACCTTGTCGTGAATCCATGGTGGGTTAAAAGCTTCTACGACAACGAAAAGCTTCTAAGTTTGATCACCAATGAAGCTTCTCTCGATCACAGCCATGGCTTCTAA 1413 40.76 MEAERSFQHFCKLCNKRFRCGRSLGGHMRSHLMNAEPEFNEKLKRAKLRGLNNGGINTNKMKILDSSTCSGYGLRENPKRNSKHSNQDSDNSIRGKFCRECGKGFQSWKALFGHMKCHSEKDKTSIKMEDQESWSFVDQKLINDSQSDNEFSAPNRKKRSSRRRIRQSKTATSSSFSIANASSSASEIDQEQEEIALCLIMLSRDMGHWGGISSIAESSDNNSIFSEIPSFTRKNFVESKFEFGEMDSGNRDFIGKQTEFKKTKFKKKSEHDNTFGIMNSATKLGKNIINEDPKIGSKYQKTSKIHPPDSENYKISNKRSKFECSSCRKVFHSYQALGGHKASHRKMKSCFNSTMEIAENSIEAENENQIDPEISVSKSKRKMHECPICFKLFSSGQALGGHKRSHLFGCSEKIPEIREFIDLNLPAPADEESNNNHLVVNPWWVKSFYDNEKLLSLITNEASLDHSHGF 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3921864 3923276 + BLOR07423 Blo16g00175 71366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00175 470 MobiDBLite consensus disorder prediction 167 187 - -
Blo16g00175 470 SMART c2h2final6 322 344 IPR013087 -
Blo16g00175 470 SMART c2h2final6 384 406 IPR013087 -
Blo16g00175 470 SMART c2h2final6 96 118 IPR013087 -
Blo16g00175 470 SMART c2h2final6 9 31 IPR013087 -
Blo16g00175 470 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Blo16g00175 470 ProSitePatterns Zinc finger C2H2 type domain signature. 386 406 IPR013087 -
Blo16g00175 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 322 349 IPR013087 -
Blo16g00175 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Blo16g00175 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 384 406 IPR013087 -
Blo16g00175 470 Pfam C2H2-type zinc finger 98 120 - -
Blo16g00175 470 Pfam C2H2-type zinc finger 384 406 - -
Blo16g00175 470 Pfam C2H2-type zinc finger 9 31 - -
Blo16g00175 470 Pfam C2H2-type zinc finger 322 346 - -
Blo16g00175 470 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Blo16g00175 470 MobiDBLite consensus disorder prediction 145 187 - -
Blo16g00175 470 Gene3D Classic Zinc Finger 6 118 - -
Blo16g00175 470 ProSitePatterns Zinc finger C2H2 type domain signature. 324 344 IPR013087 -
Blo16g00175 470 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 460 - -
Blo16g00175 470 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 460 - -
Blo16g00175 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Blo16g00175 470 SUPERFAMILY beta-beta-alpha zinc fingers 322 406 IPR036236 -
Blo16g00175 470 SUPERFAMILY beta-beta-alpha zinc fingers 9 118 IPR036236 -
Blo16g00175 470 Gene3D Classic Zinc Finger 319 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00175 - - - jre:108990953 422.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00173 Blo-Chr12:11441496 Blo16g00175 Blo-Chr16:3921864 5.90E-06 dispersed
Blo16g00175 Blo-Chr16:3921864 Blo07g00054 Blo-Chr7:773870 2.76E-16 dispersed
Blo16g00175 Blo-Chr16:3921864 Blo02g00390 Blo-Chr2:4613664 3.24E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g613 . Blo16g00175 . . . . . . . . . . Car10g00207 Car11g00174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00587 . . . . . . . . . . Cpe18g00770 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002585 2 2 1 2 2 1 4 1 1 1 1 1 4 2 2 4 1 0 4 1 2 2 2 2 2 2 2 4 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13375 PF13912 zf-C2H2_6 7.00E-11 CL0361 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00175 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0