Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00178 ATGTCCGACAGCGAAGATCATCAGTTTGAATCCAAGGCCGACGCCGGCGCTTCCAAAACCTACCCTCAGCAAGCTGGTACTGTTCGCAAGAATGGCTACATCGTCATCAAGGCCCGCCCTTGCAAGGTTGTTGAAGTTTCTACCTCCAAGACTGGAAAACATGGCCATGCTAAGTGCCACTTTGTTGGAATTGACATTTTCACTGGCAAGAAGTTTGATGATATAGTTCCCTCTTCCCATAACTGTGATGTTCCTCATGTTAATCGCACTGATTATCAGCTTATCGATATTTCTGAGGATGGATTTGTGAGCTTGCTGACAGAAAATGGAAACACTAAGGATGATCTGAGGCTCCCAAATGATGATAGTTTGCTTACCCAGATAAAGGAGGGTTTTTCTGAGGGGAAAGATCTTGTTGTCACTGTGATGTCTGCCATGGGAGAAGAGCAGATTTGTGCTCTGAAGGACATTGGGCCCAAGTAG 483 45.76 MSDSEDHQFESKADAGASKTYPQQAGTVRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPNDDSLLTQIKEGFSEGKDLVVTVMSAMGEEQICALKDIGPK 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3985046 3986882 + BLOR07426 Blo16g00178 71369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00178 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo16g00178 160 Gene3D - 1 86 IPR014722 -
Blo16g00178 160 SUPERFAMILY Translation proteins SH3-like domain 16 94 IPR008991 -
Blo16g00178 160 PIRSF Transl_init_eIF5A 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo16g00178 160 CDD S1_eIF5A 87 157 - -
Blo16g00178 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 154 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo16g00178 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo16g00178 160 Gene3D - 87 159 IPR012340 -
Blo16g00178 160 MobiDBLite consensus disorder prediction 1 22 - -
Blo16g00178 160 SMART eIF_5a_2 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo16g00178 160 SUPERFAMILY Nucleic acid-binding proteins 87 157 IPR012340 -
Blo16g00178 160 PANTHER BNAA07G09420D PROTEIN 1 157 - -
Blo16g00178 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00782 Blo16g00178 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01052 Blo-Chr12:28322063 Blo16g00178 Blo-Chr16:3985046 1.43E-96 dispersed
Blo16g00178 Blo-Chr16:3985046 Blo18g00009 Blo-Chr18:103981 9.80E-91 dispersed
Blo11g00789 Blo-Chr11:11920878 Blo16g00178 Blo-Chr16:3985046 4.39E-106 wgd
Blo16g00178 Blo-Chr16:3985046 Blo04g00782 Blo-Chr4:7763372 1.74E-117 wgd
Blo16g00178 Blo-Chr16:3985046 Blo06g00921 Blo-Chr6:32453612 2.61E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00178 K03263 - mnt:21398335 314.694