Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00180 ATGCAAGGAGCACCTCGTCCCCCACCTCCTCCATTTCGAGTAGGAGTGCCACCTCCGCCACCTCCTCCAATCCCAGGAGCACCTTCTCCACCACCTCCTCCAATGCGAGTAGCACCACCCCCTCCACCACCACCAATGCAAGGAGCACCTCCTCCTCCTCCTCCTCCTTTTCATGGATCAACACCTCCACCTTCAGGTGGCCGTCCCCCTCCCCCTCCTCCACCAGGGGCTCGTGTTCCGGGCCCACCTAATCCTCCTAAACTTCCAGGTGGTGGGCCTCCTCCACCTCCACCTTTAGGTGCCAAAGGAGCTAATGCTTCTCCTGATGCAAGAGGTCTTGCTGTAGGGAGAGGTCGTGGGCTGTCGCGTCCTTCAAGCATGAATGCCGTAGGACCTCGACGATCTTCTTTGAAGCCTCTGCACTGGAGCAAAGTGACAAGAGCCTTGCAAGGGAGCTTGTGGGATGAAATCCAAAGATATGGAGAGCCTCAAATTGCACCAGAGTTTGATGTATCTGAGTTAGAGACCCTTTTCTCTGCAAATGTCCCAAAACCTGCTGATGGTGGAGGCAAATCAGGAGGCCGACGAAAGTCAGTTGGATCCAAGACTGACAAAGTGCATTTGATTGACCTAAGAAGAGCGAATAACACCGAGATTATGCTCACCAAAGTTAAGATGCCTCTTTCTGATATGATGGCTGCAGTGCTGGCAATGGATGAGTCAGTCTTAGATGTTGACCAAGTGGAAAATCTCATTAAGTTTTGTCCAACGAAGGAGGAGATGGAACTTCTCAAGGGATACACGGGTGACAAAGACAGTCTTGGAAAGTGTGAACAGTATTTTATGGAGCAGATGAAAGTACCTCGGGTGGAGTCAAAATTAAGAGTATTTTCTTTCAAAATTCAATTTCGCTCTCAGATTTCAGAATTCAAAAAGAGTTTAAACACCATAAACTCTGCGTGTGAAGAGGTCAGGAATTCTGTTAAACTAAAGGAGATTATGAAGAAAATCCTTTATCTGGGAAATACATTAAACCAAGGAACTGCAAGGGGTTCTGCAATTGGCTTCAAGTTGGACAGTCTTTTGAAGCTCACTGACACCCGTGCTTCTAATAGTAAAATGACACTTATGCATTACCTTTGCAAGGTCCTGGCTTCTCGGTCACCAACACTGCTTGATTTCCATCTAGACGTGGGTAGTCTTGAAGCTGCATCTAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCAATAATTAAGGGATTAGAGAAGGTCAAACAGGAGCTAGTTGCCTCCGAAAGCGATGGTCCAGTCTCGGATGTTTTTCGTAAGACATTGAAAGACTTTGTGGACATCACGGAGACTGAGGTGGCATCTGTGACAAATTTATACTCTGTGGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCTGCCCGTTGCCCATTTGAGCAAGTTGTAGCAACTCTCTTAAATTTTATAAGAATGTTTCGTAAAGCCCACGAAGAGAACTACAAACAGGCCGAATTAGAAAAGAAGAAAGCGGAGAAGGAAGCGGAAATGGAGAAGGCCAAGGGCATTAACCTAACAAAAAAGAGTGGGAAATAG 1623 46.64 MQGAPRPPPPPFRVGVPPPPPPPIPGAPSPPPPPMRVAPPPPPPPMQGAPPPPPPPFHGSTPPPSGGRPPPPPPPGARVPGPPNPPKLPGGGPPPPPPLGAKGANASPDARGLAVGRGRGLSRPSSMNAVGPRRSSLKPLHWSKVTRALQGSLWDEIQRYGEPQIAPEFDVSELETLFSANVPKPADGGGKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDSLGKCEQYFMEQMKVPRVESKLRVFSFKIQFRSQISEFKKSLNTINSACEEVRNSVKLKEIMKKILYLGNTLNQGTARGSAIGFKLDSLLKLTDTRASNSKMTLMHYLCKVLASRSPTLLDFHLDVGSLEAASKIQLKSLAEEMQAIIKGLEKVKQELVASESDGPVSDVFRKTLKDFVDITETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVVATLLNFIRMFRKAHEENYKQAELEKKKAEKEAEMEKAKGINLTKKSGK 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4013756 4020794 + BLOR07428 Blo16g00180 71371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00180 540 MobiDBLite consensus disorder prediction 517 540 - -
Blo16g00180 540 Coils Coil 409 433 - -
Blo16g00180 540 Coils Coil 503 532 - -
Blo16g00180 540 MobiDBLite consensus disorder prediction 1 102 - -
Blo16g00180 540 Pfam Formin Homology 2 Domain 134 502 IPR015425 -
Blo16g00180 540 Gene3D Formin, FH2 domain 127 514 IPR042201 -
Blo16g00180 540 SUPERFAMILY Formin homology 2 domain (FH2 domain) 204 530 - -
Blo16g00180 540 MobiDBLite consensus disorder prediction 180 202 - -
Blo16g00180 540 PANTHER FORMIN-J 18 530 - -
Blo16g00180 540 SMART it6_source 126 538 IPR015425 -
Blo16g00180 540 MobiDBLite consensus disorder prediction 517 534 - -
Blo16g00180 540 MobiDBLite consensus disorder prediction 1 135 - -
Blo16g00180 540 ProSiteProfiles Formin homology-2 (FH2) domain profile. 127 528 IPR015425 -
Blo16g00180 540 PANTHER FORMIN-LIKE PROTEIN 15A-RELATED 18 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00180 - - - cpep:111780176 741.495
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00779 Blo16g00180 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01054 Blo-Chr12:28328199 Blo16g00180 Blo-Chr16:4013756 7.40E-168 dispersed
Blo16g00180 Blo-Chr16:4013756 Blo04g00781 Blo-Chr4:7742880 4.34E-180 dispersed
Blo16g00180 Blo-Chr16:4013756 Blo04g00779 Blo-Chr4:7722084 1.40E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo01g01756 . 89 400 Protein tyrosine phosphatase (PTP) family AT1G71860 66.1 1.1e-122 436.8
Blo06g01155 . 18 910 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 5.3e-302 1033.9
Blo04g01221 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 1.3e-71 266.2
Blo04g00349 BCT 68 349 Protein tyrosine phosphatase (PTP) family AT3G52180 68.8 3.7e-113 404.8
Blo13g00691 BCT 114 387 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 8.6e-110 393.7
Blo04g00191 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.9 4.1e-112 401.4
Blo18g00335 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 4.6e-198 687.6
Blo02g00060 . 13 274 Protein tyrosine phosphatase (PTP) family AT2G32960 51.9 5.9e-65 244.6
Blo13g00337 BCT 169 350 Protein tyrosine phosphatase (PTP) family AT2G32960 64.6 5.9e-65 244.6
Blo17g00522 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 5.3e-50 194.9
Blo04g01214 BCT 24 150 Protein tyrosine phosphatase (PTP) family AT2G32960 54.9 1.6e-38 156.8
Blo03g00441 . 55 384 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.8e-98 356.3
Blo01g00533 . 6 265 Protein tyrosine phosphatase (PTP) family AT2G35680 53.0 5.5e-79 291.6
Blo01g00533 . 27 201 Protein tyrosine phosphatase (PTP) family AT5G56610 53.1 4.9e-45 177.9
Blo13g00337 BCT 148 350 Protein tyrosine phosphatase (PTP) family AT4G03960 55.6 2.1e-62 235.7
Blo17g00522 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 58.3 1.4e-53 206.5
Blo04g01214 BCT 25 141 Protein tyrosine phosphatase (PTP) family AT4G03960 64.1 2.3e-40 162.5
Blo17g00522 . 3 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.7 7.1e-82 300.4
Blo13g00337 BCT 160 347 Protein tyrosine phosphatase (PTP) family AT3G02800 53.7 2.0e-52 202.6
Blo04g00099 BCT 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.5 2.9e-59 227.3
Blo13g00894 BCT 5 184 Protein tyrosine phosphatase (PTP) family AT3G55270 65.4 6.6e-59 226.1
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00325 . 29 602 Protein tyrosine phosphatase (PTP) family AT3G19420 68.5 1.2e-228 789.6
Blo04g01266 . 533 1110 Protein tyrosine phosphatase (PTP) family AT3G19420 68.0 2.7e-225 778.5
Blo06g00279 . 31 430 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 6.5e-147 518.1
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo03g00118 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.0 8.7e-108 387.1
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 1.9e-285 978.4
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 2.0e-258 888.6
Blo07g01154 . 83 664 Protein tyrosine phosphatase (PTP) family AT5G28210 57.7 2.5e-186 649.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00180 Blo_Chr16 FPKM 18.598942 23.228245 16.359457 19.208115 11.523303 14.724056 9.67726 19.820635 17.812031 19.842081