Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00187 ATGAATTCGCTGACAAATCAGACTCTTACGATAAAAGCTTTGCCTTTCGCTTGTAAATTGGTATCCCCCTTTCCATTTACTGAAAGCCCATTATTTATTTCCAGCAGAAATCGGCGAAAGTTCAGTTCTTCAGAAGCTTTGCAGTTCTTCAATAACTATGCAAAATCAACTCGATGCAATATCAGAACAACGAAAACCATACACTCCCAGTTACTCAAAACAGCTGCTTTGCAGTCTGATGTCTTTGTTGCAAATTCTCTGCTGGATTGTTACCGGAAATCTGCTGCCATGGTTAATGCAATCAGATTGTTTGATACAATTCCTCAACCAAATGTCATTTCTTGGAATTTAGTAATTTCGGGTTATAATCAGAACTCGTCATTTGCTGATTCATGGAGGAGTTTTTGCAAAATGTACTCTTCAGGCTGCGAACCAAGTGAGATAACTTATGGGATTGTTCTTTCCGCTTGTACCGCCCTGCAATCCCCCAAGCTTGGTATGCAAATTTATTCTCTTTCGATGAAGAATGGATTATTTTCGAATGGTTTTGTTCGAGCCGGAGTTATTGACTTATTTTCAAAAAATCACAGCTTTGAGGATGCTCTAAGAGTGTTTCATGATGTTTCATGTCAGAACGTGGTCTGCTGGAATGCCATTATTTCAGGTGCAGTTATGAATGGAGATTATTTAATGGCTTTAGATCTTTTTCACCTAATGCAAGATAGATTTGTGCTGCCAAATAGTTTTACCTTTTCCAGCATTCTATCTGCTTGCACCGCCCTCGAAGAACTCGAAGCTGGAAGAAAAGTGCAAGGATTGGTGATTAAATATGGGGAACAAGATGTTTTCGTTGGAACAGCTCTTGTCGATTTGTATGCCAAATGTGGAGATATGAATGAAGCTGTGAAGAAATTCATGGAGATGCCAATTCACAATGTGGTATCATGGACTGCCATAATATCTGGTTTTGTACACAAAAAGGATAATTATATGGCCCTTGAATATTTTAAAAAGATGAGGAAAACTGGGGAGGAAATAAATAGCTATACTGTTACTAGTATACTTACAGTCAGTGCTGTAATGGGTTTGCTAAAAGAGGCAGTTCAACTCCATTGTTGGATTCTTAAAGCTGGTTTCTTGTCAGATGCAGTGGTGGGAGCTGCTTTAGTTAATATGTATTCGAAAATCGGAGCCGTAGATATTTCTGCAGACGTATTTGGAGAGATGAAACATAAGAAGAGTACTGGTTTATGGACTGCCATGTTGAGTTCCTTTGCTCATAACGAGGATTCTGGAAGAGCTACTGAATTTTTCAGGAGAATGTTGTGGGAAAACATCGAACCAGATAAGTTTTCGACTTCTAGTATCTTAAGTGTCACGGACTGTTCAAAATTTGGGAGGCAAGTGCATAGTTTAACGCTTAAAAATGGATTAGTCTCTGATATTTCTGTCAGTAGTTCTCTTTCGACAATGTATTCCAAGTGCGGAAATATAGAGGACTCTTATGGAGTTTTCGCAAATATGGTAGAAAAAGATAATGTTTCGTGGGCTTCGATGATTGCAGGTTTCTCCGAACATGGCTTCTCTGATGAAGCCATTCGAATATTCCGAGAAATGTTGTTTGAAGAGACTAAACCTGATCAAACGACGTTAACTGCTGTCTTGACTGCTTGTTTTAGTCTTCGATCCTTACGGATGGTTCGGGAAATTCATGGATTTGCTTTTCGTGCAGGATTTCACGAAGAAAATAGTCTATGCAGTGCACTTGTGACTATGTATTCTAAGGCCGGTTCCCTCGAAATAGCGAGAAGGGTGTTCGAAATGTTACCTCAAAAGGATCATTTTTCATGTACATCATTGATTTCTGGACATGCTCAACGAAAGTGCGTGAAAGAAGCACTTCTACTGTTCGATGATATGAGGTCGGCTAATTTAGCCACTGATGCCTCAATTCCGTCTATTTTTGGAGCCATTGCTTCTTTGAATAGGCCAGGAATTGGAATTCAGCTTCATGCTCACACCACAAAAGTGGGGTTGGAGAAAGATGTTTCTGTTGGCAGTTCACTTGTTATGATGTACTCAAAATGTGGAAACATCGAAGATTGCCTCCGAGCATTCGATCAAATCGAGAAACCCGACTTGATCGGATGGACAGCTCTGATTGTGAGCTATGCTCAACATGGAAAAGGCACAGAGGCGTTAAGAGTCTATGAGCTGATGAAGAAAGAAGGAATCAAACCTGATCCCGTAACCTTTGTCGGGGTTTTATCTGCATGTAGCCATAATGGGTTGGTTGAAGAAGGATATTTCCATCTCGATTCAATGGCTAAAGACTACGGACTCGAGCCAGGCCATCGTCATTATGCATGTATGGTTGATCTTCTCGGCCGGTCAGGCAAACTCAAAGAGGCCGAAAGGTTCATTAGCAATATGCCCATCGAGCCCGATGCTCTAGTATGGGGGACCCTTCTTGCTGCTTGTAAAGTACATGGAGATATCGACCTCGGAAAGCTAGCCGCAAAAAAGGTTATGGAGTTGGAGCCTAGTGATAGCGGTGCGTATGTTTCTCTATCGAATATTTGTGCAGATTTAGGCCACTGGGACGATGTCTTGAAAATTAGAAGCACTATGAAGGAAACAAGGGTGGCAAAGGAACTCGGTTGGAGCTATGTGTGA 2676 40.96 MNSLTNQTLTIKALPFACKLVSPFPFTESPLFISSRNRRKFSSSEALQFFNNYAKSTRCNIRTTKTIHSQLLKTAALQSDVFVANSLLDCYRKSAAMVNAIRLFDTIPQPNVISWNLVISGYNQNSSFADSWRSFCKMYSSGCEPSEITYGIVLSACTALQSPKLGMQIYSLSMKNGLFSNGFVRAGVIDLFSKNHSFEDALRVFHDVSCQNVVCWNAIISGAVMNGDYLMALDLFHLMQDRFVLPNSFTFSSILSACTALEELEAGRKVQGLVIKYGEQDVFVGTALVDLYAKCGDMNEAVKKFMEMPIHNVVSWTAIISGFVHKKDNYMALEYFKKMRKTGEEINSYTVTSILTVSAVMGLLKEAVQLHCWILKAGFLSDAVVGAALVNMYSKIGAVDISADVFGEMKHKKSTGLWTAMLSSFAHNEDSGRATEFFRRMLWENIEPDKFSTSSILSVTDCSKFGRQVHSLTLKNGLVSDISVSSSLSTMYSKCGNIEDSYGVFANMVEKDNVSWASMIAGFSEHGFSDEAIRIFREMLFEETKPDQTTLTAVLTACFSLRSLRMVREIHGFAFRAGFHEENSLCSALVTMYSKAGSLEIARRVFEMLPQKDHFSCTSLISGHAQRKCVKEALLLFDDMRSANLATDASIPSIFGAIASLNRPGIGIQLHAHTTKVGLEKDVSVGSSLVMMYSKCGNIEDCLRAFDQIEKPDLIGWTALIVSYAQHGKGTEALRVYELMKKEGIKPDPVTFVGVLSACSHNGLVEEGYFHLDSMAKDYGLEPGHRHYACMVDLLGRSGKLKEAERFISNMPIEPDALVWGTLLAACKVHGDIDLGKLAAKKVMELEPSDSGAYVSLSNICADLGHWDDVLKIRSTMKETRVAKELGWSYV 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4236827 4239502 + BLOR07435 Blo16g00187 71378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00187 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Blo16g00187 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Blo16g00187 891 PANTHER OS09G0413300 PROTEIN 365 460 - -
Blo16g00187 891 PANTHER OS09G0413300 PROTEIN 680 891 - -
Blo16g00187 891 PANTHER OS07G0578800 PROTEIN-RELATED 365 460 IPR045215 GO:0003723|GO:0009451
Blo16g00187 891 PANTHER OS07G0578800 PROTEIN-RELATED 680 891 IPR045215 GO:0003723|GO:0009451
Blo16g00187 891 Pfam PPR repeat 615 644 IPR002885 -
Blo16g00187 891 Pfam PPR repeat 418 445 IPR002885 -
Blo16g00187 891 Pfam PPR repeat 788 811 IPR002885 -
Blo16g00187 891 Pfam PPR repeat 687 710 IPR002885 -
Blo16g00187 891 Pfam PPR repeat 286 309 IPR002885 -
Blo16g00187 891 Pfam PPR repeat 586 612 IPR002885 -
Blo16g00187 891 PANTHER OS07G0578800 PROTEIN-RELATED 568 680 IPR045215 GO:0003723|GO:0009451
Blo16g00187 891 PANTHER OS09G0413300 PROTEIN 58 122 - -
Blo16g00187 891 PANTHER OS09G0413300 PROTEIN 112 360 - -
Blo16g00187 891 Pfam E motif 830 891 IPR046848 -
Blo16g00187 891 PANTHER OS07G0578800 PROTEIN-RELATED 58 122 IPR045215 GO:0003723|GO:0009451
Blo16g00187 891 PANTHER OS07G0578800 PROTEIN-RELATED 112 360 IPR045215 GO:0003723|GO:0009451
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 363 464 IPR011990 GO:0005515
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 30 162 IPR011990 GO:0005515
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 465 569 IPR011990 GO:0005515
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 163 274 IPR011990 GO:0005515
Blo16g00187 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Blo16g00187 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Blo16g00187 891 PANTHER OS09G0413300 PROTEIN 462 582 - -
Blo16g00187 891 PANTHER OS09G0413300 PROTEIN 568 680 - -
Blo16g00187 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 713 747 IPR002885 -
Blo16g00187 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Blo16g00187 891 Pfam PPR repeat family 110 157 IPR002885 -
Blo16g00187 891 Pfam PPR repeat family 212 258 IPR002885 -
Blo16g00187 891 Pfam PPR repeat family 511 558 IPR002885 -
Blo16g00187 891 Pfam PPR repeat family 712 760 IPR002885 -
Blo16g00187 891 Pfam PPR repeat family 312 356 IPR002885 -
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 774 884 IPR011990 GO:0005515
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 570 646 IPR011990 GO:0005515
Blo16g00187 891 PANTHER OS07G0578800 PROTEIN-RELATED 462 582 IPR045215 GO:0003723|GO:0009451
Blo16g00187 891 TIGRFAM PPR: pentatricopeptide repeat domain 615 645 IPR002885 -
Blo16g00187 891 TIGRFAM PPR: pentatricopeptide repeat domain 717 748 IPR002885 -
Blo16g00187 891 TIGRFAM PPR: pentatricopeptide repeat domain 113 147 IPR002885 -
Blo16g00187 891 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Blo16g00187 891 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 275 362 IPR011990 GO:0005515
Blo16g00187 891 Gene3D Tetratricopeptide repeat domain 651 773 IPR011990 GO:0005515
Blo16g00187 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00187 - - - bhj:120082449 1152.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00187 Blo-Chr16:4236827 Blo01g00327 Blo-Chr1:3978582 1.68E-43 dispersed
Blo16g00187 Blo-Chr16:4236827 Blo08g00213 Blo-Chr8:2487371 1.34E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00187 Blo_Chr16 FPKM 2.06765 2.153757 3.203095 2.478005 3.842072 3.625792 4.332286 3.892004 4.082399 4.993684