Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00190 ATGCTTGTTCTCCTTCAAGCATTTATCAATAGCGAAATCGATAAGCCGAGCAACAGATGTGGTTGTACTTGTATCGATACCAATGGAGATGGTACCTGTGAGGAAGTCTGTGGGATTCAGTACTCGACTTTGGAACAAGTTAGTCGATGTCCAATCGAAAGCCCCCCGGAATGGCCTCCATTGCTGCAAATGCCTGGACCTCAATTCCGTGCCGTGAGGTCTAATTTCATTTCGAACACGGACTTGCCTAACGAGTCTTGCCGGAGTACGGGCTCTTGTCCTGCTACGATTCTTTTCACCGGCAATAATCAATCTCTTGGAGAAATTATGACTGTAAGTATGATCGGGAGCGCTTTCAATTTGAATTCGTCAAATGTTCTTGATAGTCTAGCTTTCAATGTGGTGGGCTCGGAATCGATGACAGAAACTAACAATTTTATCGAACCGGCCTTCTCTTCAAACCTCCCCCTATATAATGCACTACTTCAATGCTTATCAAACTCTACATTATCTGTCTCAATTCCATTATCAACCTCTGTAAGACAACAAGAGATCCAATGTGTTCAAGCATTGCCCTTATGGCGTAATAGTATTGCTGAAGTAAACGATGAGCTATACAAAGGATATAGAAAAGGGAATACAGAAAATCAGATCAATGAGATACTGGCAGCTTTCGATTACTCAAACTCGAATGAAAACAACTTTAACACGATTGTTTGGTACAATTCGACTTACAAGAACGACACAGGCGATGCTCCTATTGCATTATCGAGGGTCACACGCTCAGTGAATCTGGCATCTAATTCGTATCTCGAGTTCTTACGAGGAGCTGGAACTGAAATTCGTTTCGAGTTTGTCAAAGAAATGCCAAAACCCGGAACTAAACTTCGGCTTGATATATCTTCTCTGCTTGGTACACTCTTCTTTACATGGGTGATTCTACAGCTATTCCCAGTTATACTGACAGCGCTGGTCTACGAAAAGCAACAAAAACTGAGAATTATGATGAAAATGCATGGGCTTGGAGATGGACCTTATTGGATGATTACTTATGCTTACTTTCTCACCATTTCTAGTATCTACATGCTGTGTTTTGTAATATTTGGCTCTGTTATTGGGCTCAAATTCTTCACGATGAACGACTACAGCATCCAGTTTGTGTTTTTCTTCATCTACATAAATCTCCAAATCTCTCTGGCCTTTCTATTTGCAGTTTTCTTTTCGGTTGTCAAAACTGCAGCAGTTATCGCTTACATATGTGTATTCGGAAGTGGTCTCTTAGGCGCTTTTCTCTTCCAGTTCTTTATTCAAGATCCATCATTTCCGAAGGCCGGGCTCATTGCGTTTGAGTTGTATCCTGGGTTTGCTTTATATCGTGGTTTGTATGAGTTTGCTCAATATTCCTTCACGGGGAACTACATGGGAACTAAAGGGATGCGATGGGGAGATTTAAGCGATAGTGATAATGGAATGAGAGATGTTTTGATAATCATGCTTATAGAGTGGTTAATAATTGTTGTGGTTGCATATTATCTTGATCAAGTTGTATCGACGGGAAGCGGGAAAAGTCCTCTATTTTTCTTGCAAAAATTTAGGAAGAGGTCTCCATCGGCTTTCCGAAAGCCTAGTTTGCGGAGGCAAGAATCGAAAGTGTTTGTGCAGATGGAAAAACTTGATGTCAGTCAAGAGAGAGAGAAGGTTGAGCAGTTGTTGATGGAACCAGAGATAAGTCATTCAATTGTGTGTGACAATCTCAAAAAGATGTATCCTGGAAGAGATGGGAACCCTCCAAAATTCGCAGTTCAAGGACTATCTCTTGCCATTCCTCGAGGAGAGTGCTTTGGAATGCTCGGTCCAAACGGTGCCGGAAAGACCTCTTTTATCAGCATGATGATTGGACTCACAAAACCAAGTGATGGGTCTGCATTTGTGGAAGGGATTGACATAAGGACTCAAATGGATAGAATATACACCAGTATGGGAGTATGCCCGCAACACGACTTGCTCTGGGAAACCCTCACGGGAAGGGAGCACCTTCTTTTCTACGGCCGACTTAAGAATCTCCAAGGCTCCGCTTTAACGCAAGCAGTGGAAGAATCTCTAAAAAGTGTGAACTTATACCATGGAGGAGTTGCAGACAGACAAGCTGGAAAGTACAGTGGGGGGATGAAAAGGAGGCTTAGTGTTGCCATTTCGTTGATCGGGGATCCAAAGGTTGTTTACATGGATGAGCCTAGTACCGGGCTCGATCCAGCTTCGAGAAGTAATTTATGGAACGTTGTTAAACGTGCAAAACAAGATCGAGCAATTATCCTCACCACACATTCGATGGAAGAGGCCGAGGTCCTGTGTGATCGATTAGGAATTTTCGTTGATGGAAACCTGCAGTGCATTGGAAATCCAAAGGAGCTCAAAGGCAGATATGGCGGATCATATGTTTTCACAATGACAACCCCTTCGGAATACGATCAAGACGTGGAGAATATGGTGAAAAATATTGCCCCCGGAGCTAGCAAGATCTATCACATTGCAGGGACTCAAAAGTTTGAGCTGCCAAAACATGAAGTGAGAATAAGAGATGTTTTTCAAGCAGTCGAAAACGCCAAGAGCCGGTTCACAGTCTTCGCTTGGGGCCTGGCCGACACCACATTGGAAGACGTTTTCATCAAAGTCGCACGCGGGGCCCAAGCGTTCAATGTTTTATCTTGA 2709 43.12 MLVLLQAFINSEIDKPSNRCGCTCIDTNGDGTCEEVCGIQYSTLEQVSRCPIESPPEWPPLLQMPGPQFRAVRSNFISNTDLPNESCRSTGSCPATILFTGNNQSLGEIMTVSMIGSAFNLNSSNVLDSLAFNVVGSESMTETNNFIEPAFSSNLPLYNALLQCLSNSTLSVSIPLSTSVRQQEIQCVQALPLWRNSIAEVNDELYKGYRKGNTENQINEILAAFDYSNSNENNFNTIVWYNSTYKNDTGDAPIALSRVTRSVNLASNSYLEFLRGAGTEIRFEFVKEMPKPGTKLRLDISSLLGTLFFTWVILQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWMITYAYFLTISSIYMLCFVIFGSVIGLKFFTMNDYSIQFVFFFIYINLQISLAFLFAVFFSVVKTAAVIAYICVFGSGLLGAFLFQFFIQDPSFPKAGLIAFELYPGFALYRGLYEFAQYSFTGNYMGTKGMRWGDLSDSDNGMRDVLIIMLIEWLIIVVVAYYLDQVVSTGSGKSPLFFLQKFRKRSPSAFRKPSLRRQESKVFVQMEKLDVSQEREKVEQLLMEPEISHSIVCDNLKKMYPGRDGNPPKFAVQGLSLAIPRGECFGMLGPNGAGKTSFISMMIGLTKPSDGSAFVEGIDIRTQMDRIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLQGSALTQAVEESLKSVNLYHGGVADRQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRSNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGNLQCIGNPKELKGRYGGSYVFTMTTPSEYDQDVENMVKNIAPGASKIYHIAGTQKFELPKHEVRIRDVFQAVENAKSRFTVFAWGLADTTLEDVFIKVARGAQAFNVLS 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4298736 4303119 - BLOR07438 Blo16g00190 71381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00190 902 Pfam ABC-2 family transporter protein 214 510 - -
Blo16g00190 902 Pfam ABC transporter 602 746 IPR003439 GO:0005524
Blo16g00190 902 Gene3D - 570 842 IPR027417 -
Blo16g00190 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 808 IPR027417 -
Blo16g00190 902 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1 902 IPR026082 GO:0016021|GO:0055085|GO:0140359
Blo16g00190 902 ProSitePatterns ABC transporters family signature. 719 733 IPR017871 GO:0005524
Blo16g00190 902 CDD ABC_subfamily_A 584 805 - -
Blo16g00190 902 SMART AAA_5 610 794 IPR003593 -
Blo16g00190 902 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 580 817 IPR003439 GO:0005524
Blo16g00190 902 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 1 902 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00190 - - - csv:101219309 1462.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00190 Blo-Chr16:4298736 Blo07g00359 Blo-Chr7:5798970 1.10E-21 dispersed
Blo16g00190 Blo-Chr16:4298736 Blo16g00192 Blo-Chr16:4314938 1.48E-79 proximal
Blo04g00171 Blo-Chr4:1383668 Blo16g00190 Blo-Chr16:4298736 0 transposed
Blo12g00577 Blo-Chr12:24016698 Blo16g00190 Blo-Chr16:4298736 6.29E-16 transposed
Blo16g00190 Blo-Chr16:4298736 Blo04g00762 Blo-Chr4:7245019 1.80E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g523 . Blo16g00190 . . . Bpe13g00282 Bma06g00181 . Cmo13g00964 . . Cma11g00155 . . Sed08g0202 . Cpe04g01510 Bhi02g00338 Tan09g2142 Cmetu02g1068 . Hepe09g0132 . . Cla06g01602 Cam06g1776 Cec06g1827 Cco06g1835 Clacu06g1738 Cmu06g1683 Cre06g2499 . . Cone13ag0082 . . Csa01g00785 . Cme12g01759 . . Bda11g01693 . . Bpe15g00610 Bma03g00820 . . . Cmo11g00153 Cma13g00934 . . . . . Bhi08g01401 . . Lac10g0365 Hepe07g2289 . . . . . . . . . Lsi06g01480 Csa01g00221 Chy02g02512 Cme02g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00190 Blo_Chr16 FPKM 17.487715 20.071348 4.407031 4.53221 7.883222 8.286529 7.834773 6.75041 6.118786 6.687916