Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00197 ATGGCGGGTGAGAAAATCTTTAATGGCGGTGGTGGTAGTGGTAGTGGTAGTGGTAGTGATGGTTCCGTATCTGCTCTTTTGCTTCAGAATCAAGCTTCGGGGCCTCTTAATAATTTGCTGATTTCTGGGTCTTCCTCTTCTAGTTCTCCATCTTTTCTGGGTCCAAGATCCATGGTGAATTTCAAAGATGGTGGAAGAAGAAGTGGGTCAAACAGACTGATATTCTGCCCATTTGACGAGAAGGATAATGGGGAGGAGGAAATGGATGAATTCCTTCACCAACCTGAAAAGAAGAGGCGTCTGATGGCACATCAAGTTCAGTTTCTAGAGAAAAGCTTCGAACAGGAAAACAAGCTCGAGCCCGACAGAAAAACTCAACTGGCCAAAGAAATCGGCCTCCAGCCTCGCCAAGTTGCTATCTGGTTTCAGAACCGCCGGGCCCGCTGGAAAACTAAGCAACTCGAGAAGGATTTCGAGGTTTTGCAGTCCGACTATGATACCCTCAAGGCTGAATATGAGAATCTCATCCATGAGAAGGATAAGCTAAAAACAGAGGTTCTCCTCCTCTCAGAAAAGCTTCTGCTCAAAGAGAAAGACAAGGGAATCTTGGAATTTGAAGAACCACCATTAAATGAGATGGAAAGATCGCTTTCAAAGGATGATGAACAAGACTCCAATGCCGTAAATCTAAGCTGTAAGCTGGAAGACGTTAGTTCAGTCAAAAGTGATATATTCAATCCAGATAAGTCCGATATATCAAACGAAGAAGAAGATAGTCTGGAAAAGACCATCTTCCCTCCGTACATCTTCCCCAAGCTGGAAGATGAAGATTACTCCGACCCACCTACGAGCTCCTGCAATTTCGGATTCCACGTCGAAGACAATGCTTTCTGGTCATGGTCCTACTGA 909 44.77 MAGEKIFNGGGGSGSGSGSDGSVSALLLQNQASGPLNNLLISGSSSSSSPSFLGPRSMVNFKDGGRRSGSNRLIFCPFDEKDNGEEEMDEFLHQPEKKRRLMAHQVQFLEKSFEQENKLEPDRKTQLAKEIGLQPRQVAIWFQNRRARWKTKQLEKDFEVLQSDYDTLKAEYENLIHEKDKLKTEVLLLSEKLLLKEKDKGILEFEEPPLNEMERSLSKDDEQDSNAVNLSCKLEDVSSVKSDIFNPDKSDISNEEEDSLEKTIFPPYIFPKLEDEDYSDPPTSSCNFGFHVEDNAFWSWSY 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4403153 4404452 + BLOR07445 Blo16g00197 71388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00197 302 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Blo16g00197 302 Pfam Homeobox associated leucine zipper 152 193 IPR003106 GO:0006355|GO:0043565
Blo16g00197 302 Gene3D - 91 158 - -
Blo16g00197 302 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Blo16g00197 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 52 299 - -
Blo16g00197 302 MobiDBLite consensus disorder prediction 1 23 - -
Blo16g00197 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 299 IPR045224 GO:0003700
Blo16g00197 302 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Blo16g00197 302 SUPERFAMILY Homeodomain-like 88 154 IPR009057 -
Blo16g00197 302 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Blo16g00197 302 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Blo16g00197 302 CDD homeodomain 97 153 IPR001356 GO:0003677
Blo16g00197 302 SMART HOX_1 95 156 IPR001356 GO:0003677
Blo16g00197 302 Coils Coil 151 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00197 - - - jre:108999210 310.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00758 Blo16g00197 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00670 Blo-Chr11:7393266 Blo16g00197 Blo-Chr16:4403153 2.46E-37 dispersed
Blo16g00197 Blo-Chr16:4403153 Blo16g01135 Blo-Chr16:39868208 6.61E-49 dispersed
Blo11g00762 Blo-Chr11:10558154 Blo16g00197 Blo-Chr16:4403153 1.32E-32 wgd
Blo16g00197 Blo-Chr16:4403153 Blo04g00758 Blo-Chr4:7188204 1.35E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13377 PF00046 Homeodomain 5.00E-16 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00197 Blo_Chr16 FPKM 2.471264 3.439891 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0