Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00207 ATGTTCCATAAACGTCCAATCTACAGTTTGAACACTACAAAGCTAATCCATCTCCGTCTCTGGCGAGAGAAACCTGGGTTGTTGTTTCTGTATCAAAGTATATCTTCCCAATCTCAATCGCCTCCATCAACAGCCCAAGACGCCGCCATTGCCAACCTCGTTCTCCAATCCGACTCAAAAACCCTAATTCAAGCCCTTCAGAATTCCCAATTTCAATGGACTACGAACTTGGTCAACCGGGTTTTGAAACGCCTATGGAATCACGGACCAAAAGCTCTTCAATTCTTCAAAAATCTCGAATACCATCCCACTTACACTCACTCGTCGTCTTCCTTCGACCACGCGATCGACATTGCCGGTCGTTTGCGAGATTACAAGACTCTCTGGACCTTTGTGGCTCGAATGAGAGCTCGTCGCCTTGGCCCGACTCCCAAGACGTTCGCTATTATAACGGAGAGGTACGTATCTGCAGGTAAGCCCGATAGAGCAATTAAGGTCTTTTTGTCAATGCACGAACATGGTTGTCAACAGGATTTGAATTCGTTTAACACAATTCTTCATATTCTCTGTGAATCCAAACGAGTCGAAATGGCTTATAATAATCTGTTTAAGGTTTTGCGGGGAAGGTTTAAGGCTGATACGATTAGTTATAATATCATTGCAAACGGGTGGTGTTTGATCAAGCGACTGCCGAAGGCGTTGGAGGTGTTGAAGGAAATGGTGGAGAGGGGATTGAATCCAACTATGACTACTTATAACATAATTCTTAAAGGTTATTTCAGAACTGGACAGACTAAGGAAGCTTGGGATTTCTTCCTGCAAATGAAGAAGAGAAAATGCGAAATTGATGTTTTCACCTACACGACTATGGTTCATGGGTTTGGTGTTCTTGGGGAGATTAAGAAAGCTCGTAAGGTGTTCGATGAAATGCATAGGGAAGGTGTTTTTCCTTCTGTTGCAACATACAATGCTATGATTCAGGTTTTGTGTAAGAAAGGTACTGTCGAAAATGCAATTTCTACGTTTGAGGAGATGTTGACACAAGGTGTTGTCCCGAATTCTATGACTTACAATGTCATGATAAGAGGATTGTGTCATTCGGGTGAGATAGAAAGGGCCGTGAAATTTATGGAGCGAATGAGGCACGATCATTGCGAGCCGAACGTTCAAACGTACAATCTTTTGATCCGACACTTTTTGGAGGCCGGAGAGATAGAAAAGGGGCTGAGTACGTTTGAAAAAATGGGTGGGGATAATTGTTTTCCAAACTTGGATACCTACAATATTGTGATTAGTGCGATGTTTGTGAGGAAGAGATCAGAGGATTTGTTGACTGCAGGGAAGTTGTTGATTGAGATGGTTGACAGAGGATTTCTTCCCCGGAGGTTTACTTTCAATCGAGTATTGAATGGGCTTTTGCTGACGAATAATCAAGGTTTTGCGCAGGAAATACTGAGATTGCAGAGCAGGTGTCGGGGCCGTCTTCCTCGTCAGTTCAAATTGTGA 1506 43.23 MFHKRPIYSLNTTKLIHLRLWREKPGLLFLYQSISSQSQSPPSTAQDAAIANLVLQSDSKTLIQALQNSQFQWTTNLVNRVLKRLWNHGPKALQFFKNLEYHPTYTHSSSSFDHAIDIAGRLRDYKTLWTFVARMRARRLGPTPKTFAIITERYVSAGKPDRAIKVFLSMHEHGCQQDLNSFNTILHILCESKRVEMAYNNLFKVLRGRFKADTISYNIIANGWCLIKRLPKALEVLKEMVERGLNPTMTTYNIILKGYFRTGQTKEAWDFFLQMKKRKCEIDVFTYTTMVHGFGVLGEIKKARKVFDEMHREGVFPSVATYNAMIQVLCKKGTVENAISTFEEMLTQGVVPNSMTYNVMIRGLCHSGEIERAVKFMERMRHDHCEPNVQTYNLLIRHFLEAGEIEKGLSTFEKMGGDNCFPNLDTYNIVISAMFVRKRSEDLLTAGKLLIEMVDRGFLPRRFTFNRVLNGLLLTNNQGFAQEILRLQSRCRGRLPRQFKL 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4651416 4652921 + BLOR07455 Blo16g00207 71398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00207 501 Pfam PPR repeat 215 245 IPR002885 -
Blo16g00207 501 Pfam PPR repeat 154 175 IPR002885 -
Blo16g00207 501 SUPERFAMILY HCP-like 156 349 - -
Blo16g00207 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Blo16g00207 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Blo16g00207 501 Pfam PPR repeat family 317 366 IPR002885 -
Blo16g00207 501 Pfam PPR repeat family 387 434 IPR002885 -
Blo16g00207 501 Pfam PPR repeat family 247 294 IPR002885 -
Blo16g00207 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Blo16g00207 501 Gene3D Tetratricopeptide repeat domain 301 495 IPR011990 GO:0005515
Blo16g00207 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Blo16g00207 501 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Blo16g00207 501 TIGRFAM PPR: pentatricopeptide repeat domain 146 178 IPR002885 -
Blo16g00207 501 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Blo16g00207 501 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Blo16g00207 501 TIGRFAM PPR: pentatricopeptide repeat domain 391 423 IPR002885 -
Blo16g00207 501 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Blo16g00207 501 TIGRFAM PPR: pentatricopeptide repeat domain 251 284 IPR002885 -
Blo16g00207 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Blo16g00207 501 Gene3D Tetratricopeptide repeat domain 204 300 IPR011990 GO:0005515
Blo16g00207 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Blo16g00207 501 PANTHER OS02G0679200 PROTEIN 33 501 - -
Blo16g00207 501 Gene3D Tetratricopeptide repeat domain 46 203 IPR011990 GO:0005515
Blo16g00207 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Blo16g00207 501 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 33 501 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00746 Blo16g00207 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00853 Blo-Chr5:30881335 Blo16g00207 Blo-Chr16:4651416 2.09E-25 dispersed
Blo12g00107 Blo-Chr12:7750740 Blo16g00207 Blo-Chr16:4651416 7.51E-09 dispersed
Blo16g00207 Blo-Chr16:4651416 Blo04g00629 Blo-Chr4:5514311 4.91E-08 dispersed
Blo12g00873 Blo-Chr12:26944042 Blo16g00207 Blo-Chr16:4651416 8.51E-21 transposed
Blo11g00737 Blo-Chr11:9909086 Blo16g00207 Blo-Chr16:4651416 1.75E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00207 - - vri:117904468 737.258