Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00208 ATGGCGGCTCTTTCTTCCTCTTCTACTTTGCATGAATATTCTTCCTCCAGGAACCAGTCGTATAGCAGAAAACAGAAATCGCTTGGTCTTCTTTGTTCCAATTTCCTGAGCTTGTATAATCGCGACGGTGTCCACTTAATCGGTCTGGATGATGCTGCATCGAGATTAGGTGTTGAAAGAAGGCGGATCTATGATATTGTAAACGTATTGGAAAGTATAGGGGTTTTAGCGAGGAAGGCAAAGAATCAGTACAGCTGGAAGGGATTTGAAGCTATTCCCGTGGCCTTGCAGCAGCTCAAGGAAGAGGGTTTGAAGGAGAATTTCTGCGCATTTGATGGTAACGACAATGCAAAAATATCATGCGATGAAGATGAAGATGAAACATTGTCTAATCCTGCAACCGGAAGTCAGAACTCAAATTCTTCTCTCCCCAAATTTTCTTCTTCTAAATCAGACAACAGAAGGGAGAAGTCTTTGGCACTTCTTACACAAAATTTTGTCAAGCTATTTATCTGTTCAAAAGTGGATCTCATCTCTCTCGATGAAGCTGCAAAGTTGTTGCTTGGGGATGGTTATAATTCATCAGTAATGAGAACAAAAGTAAGACGGCTCTATGATATTGCAAACGTGCTATCCTCGATGAATCTAATTGAGAAGACCCATGCGTCAGTCACCAGAAAACCGGCATTTAGATGGTTGGGATGGAGGAATGAAGCTAGGAATGAAGTCACTTGTAGCAAGCCGCCTCCAGAATCTAGGAAAAGAGCATTCGGAATAGATGTCTCAAACATCAATATGAAGAAGAACAAAATTGCAACTTCAGCTGCAGAAATTTTGAAGGAGAATTTCAATATTACAAAGTCAGCAAATCAAAATGATTTGATATGTGAGGTTGATAGACATGGTTCCGATAAGGAATATACACAAGGGTCGAAGAGCTACCACTTTGGACCCTTTGCACCTGTAACGGTTGCTAAAGTTGGTCCCAATAACTGCAAAGTGAAGGAAACCCATGATTGGGATAGCCTCGCCTCTGCTTATCGACCTCAGTATCAGAACCAAGCGCTAAAAGCACTCTTCTCCCACTATATGGAAGCATGGAGATCATGGTACTCTGAAGCTGTGAAGAAACCGATAAAGATTTCTTGA 1149 41.6 MAALSSSSTLHEYSSSRNQSYSRKQKSLGLLCSNFLSLYNRDGVHLIGLDDAASRLGVERRRIYDIVNVLESIGVLARKAKNQYSWKGFEAIPVALQQLKEEGLKENFCAFDGNDNAKISCDEDEDETLSNPATGSQNSNSSLPKFSSSKSDNRREKSLALLTQNFVKLFICSKVDLISLDEAAKLLLGDGYNSSVMRTKVRRLYDIANVLSSMNLIEKTHASVTRKPAFRWLGWRNEARNEVTCSKPPPESRKRAFGIDVSNINMKKNKIATSAAEILKENFNITKSANQNDLICEVDRHGSDKEYTQGSKSYHFGPFAPVTVAKVGPNNCKVKETHDWDSLASAYRPQYQNQALKALFSHYMEAWRSWYSEAVKKPIKIS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4669150 4671574 + BLOR07456 Blo16g00208 71399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00208 382 MobiDBLite consensus disorder prediction 121 151 - -
Blo16g00208 382 PANTHER TRANSCRIPTION FACTOR E2F 5 374 IPR015633 GO:0000978|GO:0006357
Blo16g00208 382 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Blo16g00208 382 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Blo16g00208 382 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Blo16g00208 382 Gene3D - 148 235 IPR036388 -
Blo16g00208 382 Gene3D - 18 90 IPR036388 -
Blo16g00208 382 MobiDBLite consensus disorder prediction 130 148 - -
Blo16g00208 382 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Blo16g00208 382 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 5 374 - -
Blo16g00208 382 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Blo16g00208 382 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00208 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 506.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00243 Blo-Chr14:2153627 Blo16g00208 Blo-Chr16:4669150 4.13E-12 dispersed
Blo16g00208 Blo-Chr16:4669150 Blo12g00527 Blo-Chr12:23213746 6.75E-10 dispersed
Blo16g00208 Blo-Chr16:4669150 Blo04g00746 Blo-Chr4:7053527 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00208 . 3 377 E2F-DP Transcription Factor Family AT3G48160 54.6 1.4e-102 370.2
Blo04g00746 BCT 3 358 E2F-DP Transcription Factor Family AT3G48160 57.2 7.2e-94 341.3
Blo04g00746 BCT 21 359 E2F-DP Transcription Factor Family AT3G01330 50.6 8.9e-80 294.3
Blo07g00511 . 80 247 E2F-DP Transcription Factor Family AT5G02470 50.9 5.7e-40 161.8
Blo14g00243 BCT 17 447 E2F-DP Transcription Factor Family AT2G36010 53.8 2.7e-119 426.0
Blo08g00058 BCT 22 478 E2F-DP Transcription Factor Family AT2G36010 50.6 1.5e-114 410.2
Blo14g00243 BCT 10 458 E2F-DP Transcription Factor Family AT5G22220 55.6 1.6e-108 390.2
Blo08g00058 BCT 11 491 E2F-DP Transcription Factor Family AT5G22220 52.7 2.5e-106 382.9
Blo12g00527 . 227 520 E2F-DP Transcription Factor Family AT5G22220 58.8 4.0e-80 295.8
Blo07g00511 . 80 247 E2F-DP Transcription Factor Family AT5G02470 50.9 5.7e-40 161.8
Blo14g00243 BCT 10 458 E2F-DP Transcription Factor Family AT5G22220 55.6 1.6e-108 390.2
Blo08g00058 BCT 11 491 E2F-DP Transcription Factor Family AT5G22220 52.7 2.5e-106 382.9
Blo12g00527 . 227 520 E2F-DP Transcription Factor Family AT5G22220 58.8 4.0e-80 295.8
Blo14g00243 BCT 17 447 E2F-DP Transcription Factor Family AT2G36010 53.8 2.7e-119 426.0
Blo08g00058 BCT 22 478 E2F-DP Transcription Factor Family AT2G36010 50.6 1.5e-114 410.2
Blo04g00746 BCT 21 359 E2F-DP Transcription Factor Family AT3G01330 50.6 8.9e-80 294.3
Blo16g00208 . 3 377 E2F-DP Transcription Factor Family AT3G48160 54.6 1.4e-102 370.2
Blo04g00746 BCT 3 358 E2F-DP Transcription Factor Family AT3G48160 57.2 7.2e-94 341.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13379 PF02319 E2F_TDP 1.60E-20 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00208 Blo_Chr16 FPKM 4.195341 5.801091 4.739739 5.373888 7.465798 8.147957 7.859409 1.732082 2.148872 2.079328