Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00214 ATGGGGGCGGAAGAGCCTAGTTTTAATGAATTCTTCGAGGAAAAGAAGCGTGTGAGAAACCCTTATGTTCCTGTCGGTGCACTTCTTACGGCTGGAGTCCTGACGGCCGGCTTGATCAGCTTCAAGCAAGGCAACTCTCGTCTGGGGCAGGTGCTAATGCGGGCTCGTGTGGTTGTCCAAGGCGCCACCGTCGCACTTATGGTCGGCACGGCTTACTACTACGGCGAAAATCCTTGGAAGTCAACCATTGTTGGTGCAGGAGAGGGTTTTGGAAAGCTAGTTGGATGGAGTGGAGTGGAGACGAGCTTAGCAAAAAGAGGTTTTCCCCACCCTAAAATGGAGGGAGTGGGATTGAAGAGAAGAAGAAGAAGAAGGAGGATAACAAGAGGAGACAGGGAGAGTCTGTCAATGGTGGTTCATCGGAAAGTGCAGAGGCTTGAGCGGCTCGTACCTGGTGCAGAAGGTCTTAACCAGGACGAGGTTTTTCTCGAGACGGCTCACTACATCTTGCGGTTGAGGCTCCAAGCTTCTGTTCTTCAAGCTCTTCTTCTTCTTCAATGTCACGAGCCTTGA 573 51.48 MGAEEPSFNEFFEEKKRVRNPYVPVGALLTAGVLTAGLISFKQGNSRLGQVLMRARVVVQGATVALMVGTAYYYGENPWKSTIVGAGEGFGKLVGWSGVETSLAKRGFPHPKMEGVGLKRRRRRRRITRGDRESLSMVVHRKVQRLERLVPGAEGLNQDEVFLETAHYILRLRLQASVLQALLLLQCHEP 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4803435 4806615 - BLOR07462 Blo16g00214 71405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00214 190 Pfam Hypoxia induced protein conserved region 20 69 IPR007667 -
Blo16g00214 190 Gene3D - 20 80 - -
Blo16g00214 190 PANTHER HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED 3 78 - -
Blo16g00214 190 ProSiteProfiles HIG1 domain profile. 1 85 IPR007667 -
Blo16g00214 190 PANTHER HIG1 DOMAIN FAMILY MEMBER 2A 3 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00214 - - - zju:107418471 142.124
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00902 Blo-Chr11:18425376 Blo16g00214 Blo-Chr16:4803435 1.40E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g708 . Blo16g00214 . . . . . . . Cmo18g00120 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0120 . . Lsi02g00354 Csa01g00830 . Cme12g01713 . . . . . . . . Sed08g2490 . . . . . Car18g00146 Cpe09g01041 . Bhi08g01580 Tan05g2034 Cmetu12g1497 Lac10g0426 . . . Cla01g01390 Cam01g1451 Cec01g1486 . Clacu01g1475 Cmu01g1370 Cre01g1285 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009375 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 2 1 1 3 3 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00214 Blo_Chr16 FPKM 11.062279 13.115796 13.200191 12.396992 18.153646 18.338055 17.959078 13.652783 13.39263 12.801479