Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00219 ATGGCTTCATCAAGCTGTTACAGTTCACCTTGCGCCGCCTGCAAATTCCTCAGAAGAAAATGCTTACCAGACTGCGTATTCGCACCTTATTTTCCACCAGAAGAACCTCAAAAATTTGCAAATGTTCACAAGATTTTTGGAGCCAGCAATGTAACGAAGCTTCTGAATGAGATTCTTCCTCATCAGAGAGAAGATGCAGTTAATTCTCTTGCCTATGAAGCAGAGGCAAGAATAAGAGATCCAGTCTTTGGCTGTACCGGAGCCATCTCATTTTTCCAAAGACAAGTCCAGAGACTCCAAAAAGAGCTGGACGCTGCAAACGCCGATCTGATTCGATATTCTTGCTTTGGGATTCCAACAAATATACAGACACAACGAGAAGTAGCTTTTGTTCAGCAAATGCCTTCTCGTAGGAAACAATATGAGTTCAACAGAATGGCCAGCAGTGAGGGAGGAGGGATAAATGAGAACCCTATTTCTTTCCCAGTCAATTACGCACTTCCTTGGAGTGAGAATTCATCTGGGTATATCAATGGAGGAGGAGCAGATGGCCAGAACAAAAGTCTCTGA 570 43.51 MASSSCYSSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVTKLLNEILPHQREDAVNSLAYEAEARIRDPVFGCTGAISFFQRQVQRLQKELDAANADLIRYSCFGIPTNIQTQREVAFVQQMPSRRKQYEFNRMASSEGGGINENPISFPVNYALPWSENSSGYINGGGADGQNKSL 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4932956 4933525 + BLOR07467 Blo16g00219 71410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00219 189 Coils Coil 89 109 - -
Blo16g00219 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Blo16g00219 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 185 - -
Blo16g00219 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Blo16g00219 189 PANTHER ELONGATED PETIOLULE 1 1 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00773 Blo-Chr7:24973447 Blo16g00219 Blo-Chr16:4932956 2.87E-27 dispersed
Blo13g00135 Blo-Chr13:4292002 Blo16g00219 Blo-Chr16:4932956 3.65E-84 dispersed
Blo15g00606 Blo-Chr15:14709666 Blo16g00219 Blo-Chr16:4932956 1.54E-44 dispersed
Blo16g00219 Blo-Chr16:4932956 Blo18g00496 Blo-Chr18:6148715 2.02E-53 dispersed
Blo16g00219 Blo-Chr16:4932956 Blo15g00256 Blo-Chr15:2697547 5.29E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13381 PF03195 LOB 1.20E-40 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00219 - - tcc:18604002 268.855