Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00242 ATGGCGAAGAATCTGTTCATTTTCATTTCTCTTTCACTGGCTTTCATAGCTGGGCTGGTGGAGAGCTTCGAACTTCATGAAAGTGACCTAGAGTCCGAAGACAGCTTGTTCGATCTATACGAAAGATGGAGAAACCATAACGGAGTGACGACGAGTCAGGAAGAGAAGAATGAGCGTTTCCACGTATTCAAACAAAACCTTGCACATATTCATAGCTCAAACCAGATAGATAAGCCTTATAAGCTCGAACTGAACAAGTTTTCCGACATGACGAACGAAGAGTTTAGGAGGGGATACACAGGTTTAAAGATTAGCCATCATAGGACGTTTCAGGAAACGACGAGCCTGAACAGGAGCTTCCAGTACAAAAATGTAGAACTAGAAAGTGTCCCTCGCTCTGTAGATTGGAGGAAGAAGGGTGCCGTTGCTGCTGTTAAAGATCAAGGCCGTTGCGGAAGTTGTTGGGCATTCTCAGCGGTAGCAGCAGTGGAGGGGATAAACCAGTTGAAGACGAAAAAGCTAATATCTTTATCAGAACAACAATTAGTAGACTGTGACAGTGGTCAAAACCAGGGCTGCAATGGGGGAATGATGGACCTTGCGTTTGACTACATCAAGCAAAAAGGTGGTTTAACTGCTGAAACAAATTACCCTTACCAGGCTAGTGACGGAACTTGTGATTCTTTCAAGGTGAATTCTCCACTGGTGTCCATTGATGGGCATGAAGATGTTCCAGAAAAAAACGAAGATGCATTGCTTCAAGCTGTAGCAAATCAGCCTGTTTCTGTGGCCATTGATGCTGGCGAATCAGATTTCCAATTCTACTCCAAGGGTGTGTTCACCGGAAAATGCACGACCGAACTGAATCACGGAGTCGCGATTGTCGGATATGGAACCTCGACGGACGGGACGAAGTATTGGATCGTAAGGAACTCGTGGGGAGAAGAATGGGGGGAGAATGGTTACATAAGGATGGAACGTGGGACAGCGGAGAAAGAAGGATTGTGTGGTATAGCGATGATGGCTTCATATCCTCTCAAGAACAGTTCAGATGATCCTACCATTGATTCTCTTGAGGATGGTTATTCCAAGGATGAACTCTGA 1104 45.2 MAKNLFIFISLSLAFIAGLVESFELHESDLESEDSLFDLYERWRNHNGVTTSQEEKNERFHVFKQNLAHIHSSNQIDKPYKLELNKFSDMTNEEFRRGYTGLKISHHRTFQETTSLNRSFQYKNVELESVPRSVDWRKKGAVAAVKDQGRCGSCWAFSAVAAVEGINQLKTKKLISLSEQQLVDCDSGQNQGCNGGMMDLAFDYIKQKGGLTAETNYPYQASDGTCDSFKVNSPLVSIDGHEDVPEKNEDALLQAVANQPVSVAIDAGESDFQFYSKGVFTGKCTTELNHGVAIVGYGTSTDGTKYWIVRNSWGEEWGENGYIRMERGTAEKEGLCGIAMMASYPLKNSSDDPTIDSLEDGYSKDEL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5606060 5607552 + BLOR07490 Blo16g00242 71433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00242 367 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508|GO:0008234
Blo16g00242 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 353 - -
Blo16g00242 367 Gene3D Cysteine proteinases 14 348 - -
Blo16g00242 367 SMART Inhibitor_I29_2 40 95 IPR013201 -
Blo16g00242 367 SUPERFAMILY Cysteine proteinases 33 346 IPR038765 -
Blo16g00242 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 306 325 IPR025661 -
Blo16g00242 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Blo16g00242 367 SMART pept_c1 130 346 IPR000668 GO:0006508|GO:0008234
Blo16g00242 367 CDD Peptidase_C1A 131 345 IPR039417 -
Blo16g00242 367 PRINTS Papain cysteine protease (C1) family signature 306 312 IPR000668 GO:0006508|GO:0008234
Blo16g00242 367 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508|GO:0008234
Blo16g00242 367 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508|GO:0008234
Blo16g00242 367 MobiDBLite consensus disorder prediction 347 367 - -
Blo16g00242 367 MobiDBLite consensus disorder prediction 353 367 - -
Blo16g00242 367 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Blo16g00242 367 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 353 - -
Blo16g00242 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00242 K16292 CEP, CYSEP; KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] - tcc:18605008 509.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00466 Blo-Chr13:25375146 Blo16g00242 Blo-Chr16:5606060 7.82E-122 dispersed
Blo17g00766 Blo-Chr17:24411922 Blo16g00242 Blo-Chr16:5606060 1.42E-41 dispersed
Blo11g00507 Blo-Chr11:4669359 Blo16g00242 Blo-Chr16:5606060 9.21E-10 transposed
Blo16g00242 Blo-Chr16:5606060 Blo04g01199 Blo-Chr4:22084636 6.11E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g875 . Blo16g00242 . . . . Bma06g00236 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0184 . . . . . . Bda11g01632 . . Bpe15g00130 Bma03g01289 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000347 1 4 1 1 0 9 2 8 9 8 8 9 2 8 4 1 9 1 2 7 7 2 0 4 4 6 1 2 5 2 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00242 Blo_Chr16 FPKM 14.990896 14.307192 16.216047 17.046257 20.777782 22.606392 18.554575 13.967887 12.357269 14.175581