Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00245 ATGGCTCTCTTACCCCAAAACTTCCCCTTTCCATCGCCCATTTCTCGCCTTCGGTGTCCAAACCGCTGTACTTCCAAAGCTAGTCTTTTTCTTTACTCTAATTCCTCTTTCCGTCTCTCTTTCTCTCCAACTTCGCCCATATCTGCTTCTCCAATTTTCCTTACTCTTCTCGAAGAAGCAGAGGAAAAGGAAGAAGATGCGGCGGGTGGAAGTGACGAGAAAGAACAACTTTCGAATGACCCTCTTATTAGATTTTTCAAGTCTCGTTCTTCAATTCAAGACCCGCAACGCGAAGGAAAACTATCGTTGCAAAAGAATCGCCGTTCCTCCTGGCATCTCTCTGAGAGCACCGAATTCCACGATCGAACCGAAAGCGGCCCCAATGAGGAACTGGCAATTGAAGAAAAAACAACAACAATTGGGGATGAGAGTTCCGAGTCAGTTTCCTCAGCAGAGGGCATTGTCGGAGATATTGTGCAGATTGCTAGAAACCTACCGGAGAATACGACGTTGGGGGAGGTTATGGGAGACTACGAAGGAAGAATCAGTGAGAAAGACTGCGTGGAGGTGTTGAATCTGTTAGGCGAGGCAGGTCTTTTGGTATGTTGTCTGTATTTCTTCGAATGGATGAGGAATCAGGAACCCTCTCTCGTTTCCCCTCGAGCGTGTTCAATTCTGTTTCCATTGCTTGGAAGAGCTGGAATGGGCGATGTATTGATGGTCTTGTTCAGGAATTTACCGGTTAAAGAGGAACTAATGGATGTTCATGTCTATAATGCTGCAATATCTGGGCTTATGAACTGTAAGAGGTTCGACGATGCGTACAAGGTCTATGAAATAATGGAAACGAACAATATTCGTCCAGATCACGTGACATGTTCGATAATGATTACGATGATGAGGAAAACTGGCCGAAGTGCAAAAGAAGCATGGGACTACTTTGAGAAAATGAACAAGAAAGGAGTGAAATGGAGTCCTGAAGTTTTCGGTGCGATAATAAAGGCGTTTTGCGAGGAGGGTCTGAAGAGCCAAGCTCTTATCATTCAGTTGGAGATGAACAAGAAAGGGATTCCTTCAAATGCAATAGTTTACAACACTCTAATGGATGCTTTCAATAAATCTAACCAAATAGAAGAAGTTGAAGGTCTTGTTGCTGAAATGAAAGCCAAAGGGATTAAGCCTACGATTGCAACTTTTAACATCTTGATGTCTGCGTATAGCACGAGAATGCAGCCCAAAATCGTCGAGAAGCTGCTTGTCGAAATGGAAGAAATGGGCTTAGAGCCAAATGTGAAGTCGTATACTTGCTTGATTAGTGCATACGGAAGGTTGAAGAAGACAAGTGACTTGGCTGCAAATGCATTTCTGAGGATGAAAAAAAGGGGGATAAAACCGACTGCTCACTCCTACACGGCTCTTATTCATGCTTATTCTCTTGGTGGGTGGCATGAGAAAGCTCTGATTGCATTCGAAAACATGAAGATCGAAGGGTTAAAACCGTCAATGGAAACCTACACAGCCCTGCTGGACGCGTTCAGGCGAGCAGGAGATGCCGAAACTTTGATGAAAATTTGGAAAATGATGATCGAAGAGAAAATCAAAGGGTCAAGAGTTACTTTCAACATACTTCTTGACGGGTTTGCAAAACAAGGCCTCTACGCCGAAGCTAGAGACGTAATTCACGAATTCGGTAAGATCGGGGAAATCCCGACTGTGATGACATATAATATGCTTATAAATGCTTATGCTCGAGGAGGGCAACACTCAAAGATGCCTCAGCTGTTGAAAGAGATGGAAAATTTGAGCCTGAAACCCGATTCGGTAACATATTCGACTATGATTTATGCGTATATTCGGGTTCGGGATTTCAAGAGGGCCTTTTTTTATCACAAGAGTATGGTAAAGAGTGGGCAAGTGCCAGATGCAGGGTCTTACAGGAAGTTGAGGGCAATTTTGGATGTGAAGGCTGCAAAGAAGAATAGGAAAGACAAGAGTGCCATACTTGGAATAATCAATAGCAAAATGGGTTTGGTGAAAGCTAAGAAGGGTAAGAAAGATGAATCTCCTATCATCAGGCAACCGTCCCCTCCTCCAACCTTTGCCAAAGTTCAGAAGATTTTGGCAATGGGTCCTCCAGTGATGGCAGTGGTTCCAAGGCTAACAGTGCAAGTGCCTGTGCAATTGATGGACGAGGTCATGGCACTAGCATGGGTAAATATGAAGAACAACAAGGAGACGTGTGCTCTACTTTATGGCTCCAAGATACACCCGAAGCTGGATTGTTTCATATCATTGATTGATGTGCACACACAATATGCGTACCAAGTGATGTTGCCGGAGGCGATTGCAATTGTCCTGACACCTACAGATAAAAAGCGTCAACATGACATATTTCAAGTCTTGCGCCCTTTAGGGTTGTTGGTGATTGCCGAATGTCCGCATCAAGGCTTCCATCTTCACGACCCGCACGAACTGGAGGACCTTTACGAGAAGACCACTCATGTCGAGATGAGCTCGTCATCAATATCCGGGGCAAGCAGGCAACAACTATAG 2553 44.46 MALLPQNFPFPSPISRLRCPNRCTSKASLFLYSNSSFRLSFSPTSPISASPIFLTLLEEAEEKEEDAAGGSDEKEQLSNDPLIRFFKSRSSIQDPQREGKLSLQKNRRSSWHLSESTEFHDRTESGPNEELAIEEKTTTIGDESSESVSSAEGIVGDIVQIARNLPENTTLGEVMGDYEGRISEKDCVEVLNLLGEAGLLVCCLYFFEWMRNQEPSLVSPRACSILFPLLGRAGMGDVLMVLFRNLPVKEELMDVHVYNAAISGLMNCKRFDDAYKVYEIMETNNIRPDHVTCSIMITMMRKTGRSAKEAWDYFEKMNKKGVKWSPEVFGAIIKAFCEEGLKSQALIIQLEMNKKGIPSNAIVYNTLMDAFNKSNQIEEVEGLVAEMKAKGIKPTIATFNILMSAYSTRMQPKIVEKLLVEMEEMGLEPNVKSYTCLISAYGRLKKTSDLAANAFLRMKKRGIKPTAHSYTALIHAYSLGGWHEKALIAFENMKIEGLKPSMETYTALLDAFRRAGDAETLMKIWKMMIEEKIKGSRVTFNILLDGFAKQGLYAEARDVIHEFGKIGEIPTVMTYNMLINAYARGGQHSKMPQLLKEMENLSLKPDSVTYSTMIYAYIRVRDFKRAFFYHKSMVKSGQVPDAGSYRKLRAILDVKAAKKNRKDKSAILGIINSKMGLVKAKKGKKDESPIIRQPSPPPTFAKVQKILAMGPPVMAVVPRLTVQVPVQLMDEVMALAWVNMKNNKETCALLYGSKIHPKLDCFISLIDVHTQYAYQVMLPEAIAIVLTPTDKKRQHDIFQVLRPLGLLVIAECPHQGFHLHDPHELEDLYEKTTHVEMSSSSISGASRQQL 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5670276 5676536 + BLOR07493 Blo16g00245 71436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00245 850 Gene3D Tetratricopeptide repeat domain 306 411 IPR011990 GO:0005515
Blo16g00245 850 PANTHER OS03G0856100 PROTEIN 19 687 - -
Blo16g00245 850 Pfam Pentatricopeptide repeat domain 417 477 IPR002885 -
Blo16g00245 850 Pfam Pentatricopeptide repeat domain 490 547 IPR002885 -
Blo16g00245 850 Pfam Pentatricopeptide repeat domain 351 407 IPR002885 -
Blo16g00245 850 Pfam PPR repeat family 254 299 IPR002885 -
Blo16g00245 850 Pfam PPR repeat family 570 617 IPR002885 -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Blo16g00245 850 MobiDBLite consensus disorder prediction 61 80 - -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 324 IPR002885 -
Blo16g00245 850 PANTHER - 19 687 - -
Blo16g00245 850 Coils Coil 60 80 - -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Blo16g00245 850 MobiDBLite consensus disorder prediction 88 130 - -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 465 IPR002885 -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 538 562 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 291 325 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 468 501 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 257 289 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 574 606 IPR002885 -
Blo16g00245 850 TIGRFAM PPR: pentatricopeptide repeat domain 504 534 IPR002885 -
Blo16g00245 850 Gene3D Cytidine Deaminase, domain 2 753 844 - -
Blo16g00245 850 MobiDBLite consensus disorder prediction 100 130 - -
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Blo16g00245 850 Gene3D Tetratricopeptide repeat domain 423 526 IPR011990 GO:0005515
Blo16g00245 850 Gene3D Tetratricopeptide repeat domain 154 305 IPR011990 GO:0005515
Blo16g00245 850 Gene3D Tetratricopeptide repeat domain 527 688 IPR011990 GO:0005515
Blo16g00245 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00245 - - - pmum:103337985 913.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00245 Blo-Chr16:5670276 Blo12g00513 Blo-Chr12:23028832 5.42E-59 dispersed
Blo16g00245 Blo-Chr16:5670276 Blo16g00741 Blo-Chr16:30083614 2.50E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00245 Blo_Chr16 FPKM 16.880297 20.802149 21.449427 22.602074 13.69943 12.968287 14.825239 25.327339 24.527142 25.594185