Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00247 ATGGCATCCAAAGAGGGATTTCTTACGGACGAGCAGCGGGAAATGTTAAAAATAGCGAGCCTGAATACGGATGTTTTGTCTTCTTCTCCAAAATCTCCTCCATCTTTGCTTTCAGAGCATCTTATAAAAGCACCAACTGGTGGTAAGGCACCAACAGCTGGGATTGCTGTGAGACATGTTCGTAGGTCACACTCAGGAAAGTTTGTGCGACTGAAAAAGGATTGCATGGTGGAAAAGATTGATGAAATGTTTGTGAAGTCTGTGTTTCCTAACCTTGATGGAGCTGGTGGTAAGGGTACATGGGGAAAACTACTTGACACTGATGGGGAATCTCGTATTGACAGGAATGATCCTAACTATGACAGTGGGGAGGAGCCTTATCAACTTGTTGGATCAACTATTTCTGACCCATTAGATGAATACAAGAAATCTGTTGTTTCTATGATAGAGGAATACTTCAGTACTTGTGATGTTGAATTAGTGGCATCTGAATTAAAAGAACTTGGCTCAAGTAAGTACCATCCTTACTTTATCAAGCGGCTGGTTTCAATGGCAATGGACCGACATGACAAGGAGAAGGAAATGGCTTCCGTTTTACTTTCCTCTTTATATGCTGATGTTATAAGTCCTGGCCAAATTAGAGATGGGTTTTTCATGCTGCTTGAATCTGCTGATGATCTTGCTGTGGACATATTGGACACAGTTGATATACTTGGTTTGTTTTTAGCACGAGCTGTGGTTGATGACATCCTTCCTCCGGCTTTTCTTACTCGAGCAAAAAAATCACTCGAGGAATCTTCGAAAGGGTTTCAGGTCATCCAAACGGCTGAGAAAAGTTATTTGTCAGCTCCGCATCATGCAGAACTTATAGAAAAGAAATGGGGTGGCACTACTCATATTACAGTTGAGGAAGTGAAGAAGAAGATTGCTGTTCTTTTGAGGGAATATGTTGCGAACGGAGACACGTTTGAGGCTTGTAGGTGCATAAGGGAATTGGGTGTTTCATTCTTTCATCATGAGGTTGTTAAGCGGGCTTTAATTCTCGCAATGGAAATTAGGACAGCAGAGCCATTGATAATGAAGCTGCTAAAGGAAGTTGCTGAGGAAGGTCTCGTAAGTTCCAGTCAGATGGTGAAAGGGTTTACCCGTTTAGCTGAGAGCCTTGATGACCTTGCTCTTGACATTCCAGCGGCAAAATCCTTGTACCAATCCTTTATTCCTCGTGCCATATCTGAAGGATGGCTTGATGCTTCATTAATAAATTCTTCAGGTGAAGATGGGGAGGTGGGGGAAAAAGATGAAAATGTGAAACGCTATAAGCAAGAAGCTGTGACTATAATTCATGAATATTTTTTATCAGATGATATTCCTGAATTAATCCGGAGCCTTGAAGATTTTGGGGCACCAGAATATAACCCAATATTTTTGAAGAAGTTGATAACTCTTGCTTTGGACAGAAAGAACAGAGAAAAAGAGATGGCTTCCGTCCTTCTTTCTGCTCTTCACATTGAGATCTTCTCCACTGATGATATTGTTAATGGTTTCACGATGCTACTGGAGTCTGCAGAAGACACAGCACTAGACATTTTAGATGCTTCCAATGAGCTTGCACTTTTTCTGGCCAGGGCTGTCATCGATGACGTGTTAGCTCCATTGAATCTAGAGGAGATAGCTATTGGTTTGCCTCGTGTTTGTGCTGGTTACAAAACAGTTCGAATGGCACAATCTCTCATTGCAGCCCGCCACGCTGGTGAGAGACTGCTGAGGTGCTGGGGAGGTGGAACTGGATGGGCAGTCGAAGATGCAAAAGATAAGATAGTGAAACTCCTAGAGGAGTATGAAAGTGGAGGTGTCATTGGAGAGGCTTGCCAGTGCATTCGAGATCTCGGGATGCCTTTCTTCAACCATGAGGTAGTGAAAAAGGCGTTAGTTATGGCCATGGAAAAGAAAAATGATAGAATGCTCGATCTTTTGCAGGAGTGTTTCGGTGAAGGTCTCATCACTATCAATCAAATGACCAAGGGCTTCAGTCGCATAAAAGACGGGCTGGACGATCTAGCTCTAGACATCCCAAATGCAAAAGAGAAATTCAACTTCTACCTAGATCATGCCCAGAGGAAAGGTTGGCTCCTACCTTTATATCCTCTAATACCGGCTCTTAGTTCATAA 2169 42.74 MASKEGFLTDEQREMLKIASLNTDVLSSSPKSPPSLLSEHLIKAPTGGKAPTAGIAVRHVRRSHSGKFVRLKKDCMVEKIDEMFVKSVFPNLDGAGGKGTWGKLLDTDGESRIDRNDPNYDSGEEPYQLVGSTISDPLDEYKKSVVSMIEEYFSTCDVELVASELKELGSSKYHPYFIKRLVSMAMDRHDKEKEMASVLLSSLYADVISPGQIRDGFFMLLESADDLAVDILDTVDILGLFLARAVVDDILPPAFLTRAKKSLEESSKGFQVIQTAEKSYLSAPHHAELIEKKWGGTTHITVEEVKKKIAVLLREYVANGDTFEACRCIRELGVSFFHHEVVKRALILAMEIRTAEPLIMKLLKEVAEEGLVSSSQMVKGFTRLAESLDDLALDIPAAKSLYQSFIPRAISEGWLDASLINSSGEDGEVGEKDENVKRYKQEAVTIIHEYFLSDDIPELIRSLEDFGAPEYNPIFLKKLITLALDRKNREKEMASVLLSALHIEIFSTDDIVNGFTMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIAIGLPRVCAGYKTVRMAQSLIAARHAGERLLRCWGGGTGWAVEDAKDKIVKLLEEYESGGVIGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFGEGLITINQMTKGFSRIKDGLDDLALDIPNAKEKFNFYLDHAQRKGWLLPLYPLIPALSS 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5687818 5690465 + BLOR07495 Blo16g00247 71438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00247 722 SUPERFAMILY ARM repeat 301 422 IPR016024 -
Blo16g00247 722 ProSiteProfiles MI domain profile. 601 720 IPR003891 -
Blo16g00247 722 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 712 - -
Blo16g00247 722 SUPERFAMILY ARM repeat 138 297 IPR016024 -
Blo16g00247 722 PANTHER PROGRAMMED CELL DEATH 4 1 712 IPR039778 GO:0045892
Blo16g00247 722 ProSiteProfiles MI domain profile. 140 261 IPR003891 -
Blo16g00247 722 SMART ma3_7 305 416 IPR003891 -
Blo16g00247 722 SMART ma3_7 602 711 IPR003891 -
Blo16g00247 722 SMART ma3_7 141 252 IPR003891 -
Blo16g00247 722 SMART ma3_7 439 550 IPR003891 -
Blo16g00247 722 ProSiteProfiles MI domain profile. 438 559 IPR003891 -
Blo16g00247 722 Gene3D - 291 423 - -
Blo16g00247 722 Gene3D - 589 716 - -
Blo16g00247 722 Pfam MA3 domain 142 252 IPR003891 -
Blo16g00247 722 Pfam MA3 domain 440 549 IPR003891 -
Blo16g00247 722 Pfam MA3 domain 305 416 IPR003891 -
Blo16g00247 722 Pfam MA3 domain 603 710 IPR003891 -
Blo16g00247 722 ProSiteProfiles MI domain profile. 304 425 IPR003891 -
Blo16g00247 722 Gene3D - 135 281 - -
Blo16g00247 722 Gene3D - 432 581 - -
Blo16g00247 722 SUPERFAMILY ARM repeat 598 712 IPR016024 -
Blo16g00247 722 SUPERFAMILY ARM repeat 435 594 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00247 - - - mnt:21391570 1176.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00711 Blo16g00247 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00095 Blo-Chr12:7098114 Blo16g00247 Blo-Chr16:5687818 5.82E-07 dispersed
Blo14g00603 Blo-Chr14:10434329 Blo16g00247 Blo-Chr16:5687818 9.81E-08 dispersed
Blo16g00247 Blo-Chr16:5687818 Blo04g00711 Blo-Chr4:6536445 5.03E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00247 Blo_Chr16 FPKM 27.326937 30.471127 9.632446 10.810562 10.789143 8.981004 10.158449 11.011964 10.64081 12.868914