Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00254 ATGTTCTTCGCTTTCTTCACCAAATTAATTATTGACGTATATAAACCAGAGGTTTGGTTGAGAAATTCTAGGAGGGGAAGTGCAGAAACAATGGATAATGCTTTGAGCTTCTTCCTCAAAGATCAAGCTGTTGATCTTGATCCTGAACTTGGGTTCTCCAGTCTAACCTGTTTTTCAAGTTCTTATCTTCCATTAATGGAGGACAGTGGTCCTAACTGCTTCCAAATAAAGTCTTTCGAACACCCATATTGGGACGACAATAGGGAGACGAAGAGATTGAAACGAACGATGAGCGTTGCGGAATCATCGGGGAGTAATGACGGTACGAGCTTCGTGAATGGAGGCACGATTATCTGTCGCAGTAGCAGTAGTAGTAGCTTGAACAGCTTGGCCAGGCGGCAGATTGAAGATCGTTTACTGAGTTTTAATCAGAGGCTTGAGGCTGTCGGTGTAACTTTAAAATCTGAAGACGGCGGAGGATCGTCGGGAGAAGACGATTGCGGCGAGGAGATGAGGCTCTTTCATCTCCTCATCTCCTGCGCTGCAGCTGTTGCCTGTAGAGACCAGTCGTACGCCTCAATTCTTTTGCCCGATCTTAGAGGCAAAGCTTTGGTGTTCGGGTCTTCGTTTCAGCGGGTTGCTTCCTGTTTCGTCCAAGGGCTAGCGGATCGTCTAGCGCATATCGAACCACTCGGGTCCATCGAGCGATTTTCGCAGACCATGAATACCATGGATTTTGTATCAGAAAGCAAAGAGGAAGCTCTGCGTTTGGTGTATGAGATTTGCCCGCAAATTCAGTTTGGTCATTTTGTGGCCAATTCTGCAATATTGGAAGCCATTGAGGGAGAGAATTACGTCCACATTGTGGACTTGGGGATGACCCTTGGTTTAGGATGGGGCCAGCAATGGCTCAGCCTCTTCGACAGCCTCGCTATCCGCTCTGACCAGTTGCCGTGCCGGGTCCGAATCACTGGCATCGGCCTCGACATCGAAAGATTCCGGATAATTGGCCGGAATATCGAAACTTATGCCAGAAAGTTTGGAATCGATCTGGAATTCTCGGCGGTCGAAAGTTCATTGGAAAACCTGCGGATCAAAGACATAAAACTGATGGAAAATGAAGTTTTGATCTTCAATAGCATTCTTCAACTGCATTATGTAGTGAAAGAGAGCAGAGGGGCTTTAAATTCAGTCCTCAAAATGATCCATGAGCTTTCACCAAAGATCTTAACTTTGGTGGAGCAAGATTCCAATCATAATGGGCCATTTTTACTTGGGAGATTCATGGAAGCTCTCCACTACTACTCTGCAATCTTCGACTCGCTGGATGCAATGCTGCCAAAATACGACACTCGGAGGGCAAAGATAGAGCAGTTTTACTTCGCGGAGGAGATAAGAAATATAATGAGCTGTGAGGGGCCAAGGAGGGTCGAAAGGCACGAGAAGGTGGAGCAATGGCGGAGGAGGATGAGCAGGGCTGGATTTCAGGCTGCGCCTATGAAGATGGCTGCTCAGGCCAAGAAATGGCTTGGGAACAATAAGGATTTTGAAGGCCACACCATTGTTGAAGAGAAGGGGTGTTTGGTTCTTGGCTGGAAATCAAAGCCCATTGTTGCAGCTTCTTGCTGGAAATGCTAG 1638 47.01 MFFAFFTKLIIDVYKPEVWLRNSRRGSAETMDNALSFFLKDQAVDLDPELGFSSLTCFSSSYLPLMEDSGPNCFQIKSFEHPYWDDNRETKRLKRTMSVAESSGSNDGTSFVNGGTIICRSSSSSSLNSLARRQIEDRLLSFNQRLEAVGVTLKSEDGGGSSGEDDCGEEMRLFHLLISCAAAVACRDQSYASILLPDLRGKALVFGSSFQRVASCFVQGLADRLAHIEPLGSIERFSQTMNTMDFVSESKEEALRLVYEICPQIQFGHFVANSAILEAIEGENYVHIVDLGMTLGLGWGQQWLSLFDSLAIRSDQLPCRVRITGIGLDIERFRIIGRNIETYARKFGIDLEFSAVESSLENLRIKDIKLMENEVLIFNSILQLHYVVKESRGALNSVLKMIHELSPKILTLVEQDSNHNGPFLLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFYFAEEIRNIMSCEGPRRVERHEKVEQWRRRMSRAGFQAAPMKMAAQAKKWLGNNKDFEGHTIVEEKGCLVLGWKSKPIVAASCWKC 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5893820 5895739 - BLOR07502 Blo16g00254 71445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00254 545 Pfam GRAS domain family 174 544 IPR005202 -
Blo16g00254 545 PANTHER DELLA PROTEIN RGL1-LIKE 115 544 - -
Blo16g00254 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 115 544 IPR005202 -
Blo16g00254 545 ProSiteProfiles GRAS family profile. 164 544 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00254 - - - zju:107418113 602.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00046 Blo-Chr2:260903 Blo16g00254 Blo-Chr16:5893820 1.13E-93 dispersed
Blo07g00834 Blo-Chr7:26522441 Blo16g00254 Blo-Chr16:5893820 1.39E-65 dispersed
Blo16g00254 Blo-Chr16:5893820 Blo16g00714 Blo-Chr16:27676282 7.24E-66 dispersed
Blo16g00254 Blo-Chr16:5893820 Blo04g01183 Blo-Chr4:21268464 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g917 . Blo16g00254 . . . Bpe13g00212 Bma06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0038 . . . . . . . . Bda11g01611 . . Bpe15g00201 Bma03g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006339 3 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13385 PF03514 GRAS 2.10E-107 CL0063 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00254 Blo_Chr16 FPKM 3.781566 4.980821 7.490138 8.416929 15.315083 14.551266 16.030519 5.677856 5.124329 6.206768