Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00269 ATGGCGGCCGCTGCTCCTGCCTCCTCCTTCTCCAAGATTTCTCCTTTCCCCAGCTCTTCCAAATCTTCGAAACTCCCTTCCAATTCCTCTCTCCCCCTTTCCTCTTTCTTCGGTAGACTCTCTCTCCGCCCAGCCCTCCATTTATCCAATTCTCTTTCTAACCCCAATCCCAAATCGTCTACTTCCGCCGCCGCTGACACTGCAACTTCCTCCAGCATCGCTCCGGTTATATCATCGAACCCGGAAACCTTTACTTCCCGATTCTCCCCCGACAAGCCCAGAAAAGGAGCCGATGTCCTCGTGGAAGCGCTCGAACGACAAGGGGTCACTGATGTGTTTGCTTACCCTGGTGGAGCTTCGATGGAGATTCACCAAGCCCTCACACGCTCTTCTATTATTCGCAACGTCCTCCCCCGCCATGAGCAAGGCGGCATCTTTGCTGCCGAGGGGTATGCACGCTCATCCGGCCTTCCAGGTGTATGCATTGCCACTTCGGGCCCCGGAGCCACCAATTTGGTTAGCGGGCTCGCCGATGCTTTGCTTGATAGCGTCCCGATCGTAGCCATTACGGGTCAAGTCCCACGTCGAATGATTGGTACTGATGCGTTTCAGGAAACTCCGATTGTTGAGGTAACCCGGTCAATCACGAAGCACAACTACCTTGTTCTAGATGTAGAAGATATTCCTAGGGTAGTGAATGAGGCGTTCTTCTTAGCTACTTCCGGACGGCCTGGCCCTGTTCTCATTGATATTCCGAAAGATATACAACAACAGCTAGTGGTTCCTAATTGGAATCAATCTATGAAATTGCCTGGGTACATTTCTAGGCTGCCTAAGCCACCCTGTGAGGGTCATTTGGAACAGATTGTGAGACATATTTCAGAATCGAAGAAGCCCGTTCTATATGTGGGTGGTGGGTGTTTGAATTCAAGTGAAGAATTGAGACAGTTCGTCGATTTTACAGGAATTCCTGTTGCTAGTACTTTAATGGGTCTTGGAGCTTTTCCTTGTAAGGATGAATTATCTCTCCAAATGCTGGGTATGCATGGAACTGTTTATGCAAACTATGCTGTGGATAAAGCTGATTTGTTACTTGCATTGGGCGTGAGGTTTGATGATCGAGTGACGGGAAAGCTTGAGGCTTTTGCTAGCCGTGCCAAAATAGTCCATATTGATATTGATTCAGCTGAGATTGGGAAGAACAAGCAGCCACACGTGTCTGTTTGTGCTGATGTGAAATTGGCTTTGAGAGGAATGAACCAGATTCTAGAGGGAAAAAGAGCCAAGCTTAACCTGGACTTTTCAGTTTGGAGGGAGGAGCTAAATGAGCAGAAAACATCATATCCATTAAGCTTTAAAACATTTGGAGAAGCCATTCCTCCTCAATATGCAATTCAGGTTCTAGACGAATTGACCAATGGCAATGCCATCATAAGTACCGGTGTGGGGCAGCATCAGATGTGGGCTGCACAATTTTACAAGTATGGGAAGCCTCGTCAATGGTTAACATCAGGGGGTTTGGGAGCCATGGGCTTCGGATTGCCTGCTGCCATTGGAGCTGCCGTTGCCAATCCTGATGCCATAGTTGTTGACATTGACGGTGATGGAAGTTTTATTATGAATGTCCAAGAGTTAGCCACCATTAAAGTAGAGAAGCTTCCCGTCAAGATAATGCTTCTGAACAATCAACACTTGGGTATGGTGATGCAGTGGGAGGATCGCTTTTACAAGGCTAATAGAGCTCACACCTACCTGGGAAACCCAGAAAAAGAGTCTGAAATATTTCCTAATATGTTGAAATTCGCCGAGGCTTGTGAAATACCTGCTGCTCGTGTGACGAGGAAGGAAGATCTTAGAGAAGCTATCCAGAAAATGTTAGACACTCCTGGGCCTTATTTATTGGATGTAATTGTACCTCATCAAGAGCATGTCCTGCCTATGATACCGAGTGGTGGAGCTTTCCAGGATGTGATCACAGAGGGTGATGGAAGAGTATCTTATTAG 2004 47.36 MAAAAPASSFSKISPFPSSSKSSKLPSNSSLPLSSFFGRLSLRPALHLSNSLSNPNPKSSTSAAADTATSSSIAPVISSNPETFTSRFSPDKPRKGADVLVEALERQGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVNEAFFLATSGRPGPVLIDIPKDIQQQLVVPNWNQSMKLPGYISRLPKPPCEGHLEQIVRHISESKKPVLYVGGGCLNSSEELRQFVDFTGIPVASTLMGLGAFPCKDELSLQMLGMHGTVYANYAVDKADLLLALGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADVKLALRGMNQILEGKRAKLNLDFSVWREELNEQKTSYPLSFKTFGEAIPPQYAIQVLDELTNGNAIISTGVGQHQMWAAQFYKYGKPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIVVDIDGDGSFIMNVQELATIKVEKLPVKIMLLNNQHLGMVMQWEDRFYKANRAHTYLGNPEKESEIFPNMLKFAEACEIPAARVTRKEDLREAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFQDVITEGDGRVSY 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6318948 6320951 - BLOR07517 Blo16g00269 71460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00269 667 MobiDBLite consensus disorder prediction 11 29 - -
Blo16g00269 667 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 95 659 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Blo16g00269 667 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 459 660 IPR029061 -
Blo16g00269 667 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 91 269 IPR029061 -
Blo16g00269 667 Gene3D - 286 450 - -
Blo16g00269 667 MobiDBLite consensus disorder prediction 48 87 - -
Blo16g00269 667 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 60 666 IPR045229 -
Blo16g00269 667 PANTHER ACETOLACTATE SYNTHASE 60 666 - -
Blo16g00269 667 Pfam Thiamine pyrophosphate enzyme, central domain 287 417 IPR012000 GO:0000287|GO:0030976
Blo16g00269 667 Gene3D - 83 277 - -
Blo16g00269 667 SUPERFAMILY DHS-like NAD/FAD-binding domain 283 449 IPR029035 -
Blo16g00269 667 MobiDBLite consensus disorder prediction 48 93 - -
Blo16g00269 667 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 481 636 IPR011766 GO:0003824|GO:0030976
Blo16g00269 667 Gene3D - 451 637 - -
Blo16g00269 667 CDD TPP_PYR_POX_like 98 253 - -
Blo16g00269 667 CDD TPP_AHAS 459 651 IPR039368 GO:0030976
Blo16g00269 667 ProSitePatterns Thiamine pyrophosphate enzymes signature. 518 537 IPR000399 GO:0000287|GO:0030976
Blo16g00269 667 MobiDBLite consensus disorder prediction 1 29 - -
Blo16g00269 667 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 95 259 IPR012001 GO:0030976
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00269 K01652 E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] - zju:107418034 1077.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00312 Blo-Chr11:2522168 Blo16g00269 Blo-Chr16:6318948 5.53E-13 dispersed
Blo16g00269 Blo-Chr16:6318948 Blo17g00433 Blo-Chr17:5322465 3.99E-41 dispersed
Blo16g00269 Blo-Chr16:6318948 Blo18g00447 Blo-Chr18:4943061 6.70E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00269 Blo_Chr16 FPKM 5.054275 4.814693 5.383022 5.699615 4.229843 6.086669 5.038049 0.31392 0.721991 0.379235