Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00272 ATGGATGCCTTAGATTCCGTTGTCGATCCTCTCAGAGATTTCGCCAAAGACAGTGTTCGTCTCGTTAAGAGGTGCCACAAGCCTGATCGCAAAGAATTTACCAAAGTTGCCTTTCGTACGGCGATTGGCTTTGTCGTTATGGGCTTCGTTGGATTCTTCGTCAAGTTGATCTTTATTCCGATCAATAACATCATCGTCGGTTCTGGTTAG 210 45.24 MDALDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 69
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6393400 6393726 - BLOR07520 Blo16g00272 71463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00272 69 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3 1 69 - -
Blo16g00272 69 Pfam SecE/Sec61-gamma subunits of protein translocation complex 13 65 IPR001901 GO:0006605|GO:0006886|GO:0016020
Blo16g00272 69 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 8 66 IPR008158 GO:0008320|GO:0015031|GO:0016020
Blo16g00272 69 Gene3D Preprotein translocase SecE subunit 7 68 IPR023391 -
Blo16g00272 69 Hamap Protein translocase subunit SecE [secE]. 9 64 IPR001901 GO:0006605|GO:0006886|GO:0016020
Blo16g00272 69 PANTHER SEC61 GAMMA SUBUNIT 1 69 - -
Blo16g00272 69 SUPERFAMILY Preprotein translocase SecE subunit 5 65 IPR023391 -
Blo16g00272 69 ProSitePatterns Protein secE/sec61-gamma signature. 14 42 IPR001901 GO:0006605|GO:0006886|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00272 K07342 SEC61G, SSS1, secE; protein transport protein SEC61 subunit gamma and related proteins - nnu:104591739 129.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo15g00206 Blo16g00272 CCT
Blo15g00206 Blo16g00272 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01175 Blo-Chr6:35195421 Blo16g00272 Blo-Chr16:6393400 1.13E-43 dispersed
Blo15g00206 Blo-Chr15:2127047 Blo16g00272 Blo-Chr16:6393400 2.78E-43 dispersed
Blo16g00272 Blo-Chr16:6393400 Blo04g01167 Blo-Chr4:20161139 9.76E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g101 . Blo16g00272 Bda06g00725 . Bpe12g00479 Bpe13g00200 Bma06g00261 Bma12g01083 Cmo13g00841 Cmo18g00222 . . . . . Cpe20g00303 . Bhi02g00520 . . . . . . . . . . . . . Cone2ag0981 Cone16ag0015 Cone13ag0226 Cone19ag0211 Lsi02g00510 Csa01g00972 Chy12g01161 Cme12g01585 . Blo15g00206 Bda11g01596 Bda14g01358 Bpe07g00892 Bpe15g00222 Bma03g01251 . Sed08g2430 . . Cma13g00811 Cma18g00314 Car13g00657 Car18g00233 Cpe09g00957 . Bhi08g01503 Tan05g2975 Cmetu12g2007 Lac10g0589 Hepe07g2115 . . Cla03g00359 Cam03g0379 Cec03g0365 . Clacu03g0378 Cmu03g0983 Cre03g0675 Lsi06g01644 Csa01g00053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001129 5 5 4 4 2 2 3 1 3 2 2 2 3 2 2 3 1 4 3 1 3 2 2 1 2 2 3 2 2 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00272 Blo_Chr16 FPKM 145.224045 137.069733 16.602301 13.126501 0.247922 0.30909 0.571074 2.14388 1.738051 1.419971