Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00273 ATGGAGAGCAACCAGCAAGCTCAATCCTCTCCTTACCCACCTGCACAGCCTCCTCCGCTGCCTCCTCAGCCGTCTCAATTTCATCACCTTCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGAACAGGTTAACGAGTTTAAAAATCATCAGTTACCCTTGGCTCGAATCAAGAAGATCATGAAAGCAGATGAGGACGTCCGTATGATCTCCTCAGAAGCCCCGATTCTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTCGAACTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGGACTCTGCAGAAGAATGATATATCGGCAGCGATTACGAGGACTGATATCTTCGATTTTTTGGTGGATATTGTACCGAGAGATGAGATCAAGGATGAGGCTGGGTTGGAGAGTGTGGTTGGGGCTACTGCTAGTGGCGTACCCTACTATTACCCTCCTTTAGGACAGCCGGCGGGGACTCCGGCTGGGATGATGATCGGAAGGCCGGCAATGGATCCCACCGGAATGTACATGCAGCCTCCGTCTCAAGCGTGGCAGTCAGTATGGCAGGCGCCGCCGGAGGATGGGACGTATGGGAGTGGCGGAAACACTGGGCTTGGCAATCTTAATGGACAAAGTTCCTTAGATTTTGGCTTTCCCCCTCAGCCGTACTTGGTAGTGTTTCTAGTTGGGGTGAAATTGAGCACTTCTAGAATAGAGGCTGCAGAATAG 762 52.23 MESNQQAQSSPYPPAQPPPLPPQPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEAGLESVVGATASGVPYYYPPLGQPAGTPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQAPPEDGTYGSGGNTGLGNLNGQSSLDFGFPPQPYLVVFLVGVKLSTSRIEAAE 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6419976 6421080 - BLOR07521 Blo16g00273 71464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00273 253 Gene3D Histone, subunit A 25 137 IPR009072 GO:0046982
Blo16g00273 253 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 223 - -
Blo16g00273 253 MobiDBLite consensus disorder prediction 11 25 - -
Blo16g00273 253 MobiDBLite consensus disorder prediction 1 26 - -
Blo16g00273 253 SUPERFAMILY Histone-fold 21 131 IPR009072 GO:0046982
Blo16g00273 253 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 3 223 - -
Blo16g00273 253 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 122 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00273 - - - csv:101213576 333.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00597 Blo-Chr13:28401234 Blo16g00273 Blo-Chr16:6419976 2.13E-61 dispersed
Blo13g00963 Blo-Chr13:31998618 Blo16g00273 Blo-Chr16:6419976 4.55E-11 dispersed
Blo01g00358 Blo-Chr1:4246554 Blo16g00273 Blo-Chr16:6419976 4.62E-08 transposed
Blo16g00273 Blo-Chr16:6419976 Blo04g01166 Blo-Chr4:20154829 8.35E-125 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 82.2 1.7e-82 302.8
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.4 3.8e-71 265.0
Blo04g00467 . 48 199 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.3 2.0e-56 216.1
Blo13g00597 . 145 280 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.1 1.1e-49 193.7
Blo11g00489 . 516 673 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.8 2.7e-48 189.1
Blo11g00489 . 469 614 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.5 7.1e-54 207.6
Blo04g00467 . 25 222 CCAAT-HAP5 Transcription Factor Family AT1G08970 59.4 5.9e-48 188.0
Blo13g00597 . 89 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.7 2.2e-47 186.0
Blo16g00273 . 38 136 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.4e-41 166.0
Blo04g01166 . 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 9.1e-41 164.1
Blo11g00489 . 494 670 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.3 3.4e-58 221.9
Blo04g00467 . 47 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 1.4e-54 209.9
Blo13g00597 . 91 275 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 3.4e-50 195.3
Blo04g01166 . 35 199 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.1 2.2e-49 192.6
Blo16g00273 . 38 175 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 4.2e-48 188.3
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 75.3 1.4e-74 276.6
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.6 8.2e-64 240.7
Blo04g00467 . 48 204 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 4.2e-52 201.8
Blo13g00597 . 145 274 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.9 1.6e-46 183.3
Blo11g00489 . 516 620 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.9 2.5e-44 176.0
Blo04g00467 . 23 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.8 6.6e-64 240.7
Blo13g00597 . 110 273 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 6.8e-61 230.7
Blo11g00489 . 491 636 CCAAT-HAP5 Transcription Factor Family AT1G56170 65.8 1.3e-48 189.9
Blo04g01166 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.6 1.7e-48 189.5
Blo16g00273 . 38 161 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.9e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13386 PF00808 CBFD_NFYB_HMF 7.50E-18 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00273 Blo_Chr16 FPKM 3.012656 3.118342 0.848449 0.850329 0.0 0.0 0.0 0.0 0.0 0.0