Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00274 ATGGACGTCGCCCGTTGTTGTTGCCTTGGACATCTCCGTTTGTCTTCATCAAGCCTCCGCAAGCCTCTGCGGTTCATCGTCATCAAGCCTCTGCGGTTTATCGTCAAGCCATCGCAGTTCGTCGTCATTAACGATAAACGTGAGCGTACAGTTAAACGGCTGCGGCTGTCTAAAGCCCTGACGATACCTGAAAGCACTAGTATCTATGAGGCATGCCGTAGAATGGTTGCTCGTAGAGTTGATGCTTTATTGCTCACTGACTCCAATGCATTGCTATGTGGAATCCTAACTGACAAGGATATAGCAACTAGAGTCATTGCTCGTGAGGTTAATCTTGAGGAAACACCTGTTTCTAAAGTTATGACAAGGAACCCAGTTTTTGTTCTTTCCGACACTCTTGCTGTGGATGCCCTCCAGAAGATGGTGCAAGGGAAGTTTAGGCATTTACCTATTGTGGAGAATGGAGAGGTCATTGCGTTGCTTGATATAGCGAAATGTTTGTACGATGCAATTGCTCGATTGGAAAGGGCAGCTGAAAAGGGAAAGGCCATTGCTGCGGCTGTAGAAGGTGTCGAAAAAAATTGGGGAACATCTATCTCTGGTCCAAACACCTTCATTGAGACTCTTCGAGAAATGATATTTAAACCATCTCTCTCCACAATCATCCCAGAGAATTCAAAGATTATAACTATTGCACCCACAGAAACTGTTCTATCAACGACAAAGAAGATGCTTGAACTTCGAATAAGCGCTGCAGTTGTAACAGTTGACAATAAGCCACGGGGAATTTTGACTTCAAAGGATATCTTGATGCGCGTTATTGCACAAAAACTTCCACCGGAGTCGACTCCTGTAGAAAAGGTTATGACTCCTAGTCCAGAATGTGGCACTGTCGATACACCTATAGTTGATGCCTTACATACCATGCATGATGGGAAATTCTTGCACCTTCCAGTGGTAGACAGAGACGGAAATATCGTTGCTGTGATTGATGTGATACATATTACTCATGCTGCTGTTGCCACAGTTGGAAGTACTGCGGGTATCAATAATGAGGCTTCCAGCTCTATGATGAATAAGTTTTGGGATTCGGCCATGTCCTTAACTCCAAATGAGGACGATGAGGATGCACGGAGTGAAGTTTCGTTGAAGTTTAATTCTACCGAGGATACTGATTCTGGAAGGCCTCCTACATCTAGTCTTCCAAACACTTTTTCTTTTAAAATCCAAGATAAAAAAGGAAGAATGCATCGATTTGCATGCGATACTGGGAGTTTGACAGACGTTATAACAGCAATCCTTCAGAGAGTGGGAGATGACATTGATCGTAACAGCCTACCTCAGATTATGTATGAAGATGACGACAATGACAAAGTTGTAATGGCATCAGATAGTGATTTAGCAGCAGCTGTGGAGCATGCAAAGTCTGCTGGTTGGAAGGGTTTGAGACTGCATTTAGATTATTCAGGAACCGTTGCGCTTAAAAAAGGCTCGAGTGCGGGGGATTTGGACTATGCCCGTGCCGATGCTTGGGCTTCTGCATACAGTGCCGTTGCAGCAGGAGCTGCAGTTATCGCTGGCTTAGGCGTATTAGCATACATGAAGAGATCTGGTAGTTGA 1620 44.51 MDVARCCCLGHLRLSSSSLRKPLRFIVIKPLRFIVKPSQFVVINDKRERTVKRLRLSKALTIPESTSIYEACRRMVARRVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTLAVDALQKMVQGKFRHLPIVENGEVIALLDIAKCLYDAIARLERAAEKGKAIAAAVEGVEKNWGTSISGPNTFIETLREMIFKPSLSTIIPENSKIITIAPTETVLSTTKKMLELRISAAVVTVDNKPRGILTSKDILMRVIAQKLPPESTPVEKVMTPSPECGTVDTPIVDALHTMHDGKFLHLPVVDRDGNIVAVIDVIHITHAAVATVGSTAGINNEASSSMMNKFWDSAMSLTPNEDDEDARSEVSLKFNSTEDTDSGRPPTSSLPNTFSFKIQDKKGRMHRFACDTGSLTDVITAILQRVGDDIDRNSLPQIMYEDDDNDKVVMASDSDLAAAVEHAKSAGWKGLRLHLDYSGTVALKKGSSAGDLDYARADAWASAYSAVAAGAAVIAGLGVLAYMKRSGS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6448049 6453344 - BLOR07522 Blo16g00274 71465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00274 539 SUPERFAMILY CAD & PB1 domains 394 491 - -
Blo16g00274 539 Gene3D - 404 486 - -
Blo16g00274 539 ProSiteProfiles CBS domain profile. 121 179 IPR000644 -
Blo16g00274 539 SUPERFAMILY CBS-domain pair 48 165 IPR046342 -
Blo16g00274 539 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 44 526 IPR034896 -
Blo16g00274 539 Gene3D - 217 343 IPR046342 -
Blo16g00274 539 ProSiteProfiles CBS domain profile. 289 345 IPR000644 -
Blo16g00274 539 CDD CBS_pair_MUG70_2 225 341 - -
Blo16g00274 539 SMART cbs_1 292 340 IPR000644 -
Blo16g00274 539 SMART cbs_1 227 274 IPR000644 -
Blo16g00274 539 SMART cbs_1 58 106 IPR000644 -
Blo16g00274 539 SMART cbs_1 124 168 IPR000644 -
Blo16g00274 539 Gene3D - 38 186 IPR046342 -
Blo16g00274 539 Pfam CBS domain 225 271 IPR000644 -
Blo16g00274 539 Pfam CBS domain 285 338 IPR000644 -
Blo16g00274 539 Pfam CBS domain 117 161 IPR000644 -
Blo16g00274 539 Pfam CBS domain 57 103 IPR000644 -
Blo16g00274 539 Pfam PB1 domain 404 487 IPR000270 GO:0005515
Blo16g00274 539 ProSiteProfiles PB1 domain profile. 402 489 IPR000270 GO:0005515
Blo16g00274 539 ProSiteProfiles CBS domain profile. 55 114 IPR000644 -
Blo16g00274 539 SUPERFAMILY CBS-domain pair 227 339 IPR046342 -
Blo16g00274 539 CDD PB1_MUG70 405 489 - -
Blo16g00274 539 CDD CBS_pair_MUG70_1 56 172 - -
Blo16g00274 539 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 44 526 - -
Blo16g00274 539 ProSiteProfiles CBS domain profile. 221 281 IPR000644 -
Blo16g00274 539 SMART PB1_new 404 489 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00274 - - - egr:104426150 752.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00274 Blo-Chr16:6448049 Blo11g00761 Blo-Chr11:10473655 2.13E-08 dispersed
Blo06g01171 Blo-Chr6:35156414 Blo16g00274 Blo-Chr16:6448049 0 transposed
Blo16g00274 Blo-Chr16:6448049 Blo04g01164 Blo-Chr4:20147258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g93 . Blo16g00274 . . Bpe12g00476 . Bma06g00263 . . . Cma10g00055 Cma11g00028 . Car11g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01355 . Bpe15g00223 . . . Cmo10g00049 . . . . . . . . . . . . . . . . . . . . . . Csa01g00048 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001844 2 3 4 3 3 2 2 2 2 2 1 2 1 2 2 2 2 5 2 2 2 2 2 2 2 1 1 4 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00274 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0