Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00286 ATGGGCTGCGTTCTCGGCAGACATGCGGGTGCAGATCGACGGAGTCATTCTCTAGCTCGGAACAGTCGCAGGAGTGTCAAAGAGCCTCCGGCTGCTGTCAGAGTTATTGATGGGAGGGTTGAGAAGGAGCTGGCGCAGGTAGAGAACCCGAAGGATCGAAAAGCTGCGGATTTCGCTGCTGCAGAGCACCAAAAATACAGGCTGGATGTGAACCTGAGAAATGAGCAAGGATGGCCGACGTGGCTATTGGCGGTCGCCGGAGATGTGATCCAAGGTTGGGCCCCTCGCCGAGCCAATACGTTCGAGAAGCTGGCTAAGATTGGGCAAGGGACTTACAGCAATGTATACAAAGCAAGAGATCTACTCACTGGAAAAATTGTGGCTTTGAAGAAGGTTAGGTTCGATAATTTAGAGCCAGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTGTTCTTCGACGGCTTGATCATCCAAATGTGGTTAAACTTGAAGGATTGGTAACTTCTAGAATGTCTTGTAGTCTTTACTTAGTTTTCGAGTATATGGAACACGATCTTGCCGGCCTAGCCGCCTGCCAAGGGATCAAATTTTCCGAGCCTCAGGTTGTACATATATCTTGGTTGTTTGCAATTCATCCACATAAGATTGCTTTTAGTAATTCATATTCAGCGATAAATGTTATGCTTAGACGATGCTTATATGCTGATTACTTAATCATTCGCGCCGTTGAACAACTTCACAAGATATTTAAGTTATGCGGCTCCCCATCCGAGGAGTATTGGAAGAAGCATAAACTGCCTAATGCTACTCTGTTTAAGCCACAGCAACCATACAAACGAAGTGTGGCCGAAACTTTCAAGGATTTCCCCTCTTCTTCTTTACCTCTTGTCGACTCTCTTCTTTCGACTGATCCTGACGATCGGGGCAGTGCCACAGATGCATTGAATAGCGAGTTCTTTACCTCCGAGCCTCATGCTTGTGAACCTTCGAGTCTACCGAAGTATCCTCCAAGCAAGGAAATGGACGCGAAGTTGAGAGATGAAGAAGCAAAACGGCAAAGGGGTCTAAACGGGAAAGCTAGTGCCGTTGATGGTGTCCGGAAGGTGAGAGTTCGTGATAGAGTTTCTAAGGCCATTCCGGCTCCGGAAGCAAATGCCGAAATTCAAGCAAACTTAGATAAGTGGAGATTCGTGTCTCAATCGAACGTAAAGAGCAAGAGCGAGAAATTCCCACCGCCCCACAAGGATGGAGAGGTTGGATACCCTCGCGAAGCAGCGCACAAAGGGCCCGTGTCGTTTGGTGTGCCCGAGTCGAACACCTCTTTTAGCTCTTCCATTTTTAATTCCATCCCGGGATCGGTTAAAAGTGCTGGCTCTTCAGGGAGAACTTCCCGAAAGACGAAAACAAATAAGGATCCTCAAATGGCTCCGGCTCGAAAATTCATTCGTGCATTTAAGCCGTCGATAGGGCTGCCGATGGATTTGTTATTTAAGGCTAAATAA 1503 47.31 MGCVLGRHAGADRRSHSLARNSRRSVKEPPAAVRVIDGRVEKELAQVENPKDRKAADFAAAEHQKYRLDVNLRNEQGWPTWLLAVAGDVIQGWAPRRANTFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAACQGIKFSEPQVVHISWLFAIHPHKIAFSNSYSAINVMLRRCLYADYLIIRAVEQLHKIFKLCGSPSEEYWKKHKLPNATLFKPQQPYKRSVAETFKDFPSSSLPLVDSLLSTDPDDRGSATDALNSEFFTSEPHACEPSSLPKYPPSKEMDAKLRDEEAKRQRGLNGKASAVDGVRKVRVRDRVSKAIPAPEANAEIQANLDKWRFVSQSNVKSKSEKFPPPHKDGEVGYPREAAHKGPVSFGVPESNTSFSSSIFNSIPGSVKSAGSSGRTSRKTKTNKDPQMAPARKFIRAFKPSIGLPMDLLFKAK 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6831496 6834524 - BLOR07534 Blo16g00286 71477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00286 500 Pfam Protein kinase domain 101 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00286 500 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 52 203 - -
Blo16g00286 500 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 242 461 - -
Blo16g00286 500 MobiDBLite consensus disorder prediction 452 477 - -
Blo16g00286 500 Gene3D Transferase(Phosphotransferase) domain 1 224 359 - -
Blo16g00286 500 PANTHER CELL DIVISION PROTEIN KINASE 52 203 - -
Blo16g00286 500 PANTHER CELL DIVISION PROTEIN KINASE 242 461 - -
Blo16g00286 500 MobiDBLite consensus disorder prediction 1 27 - -
Blo16g00286 500 MobiDBLite consensus disorder prediction 9 23 - -
Blo16g00286 500 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Blo16g00286 500 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Blo16g00286 500 MobiDBLite consensus disorder prediction 323 344 - -
Blo16g00286 500 SUPERFAMILY Protein kinase-like (PK-like) 97 345 IPR011009 -
Blo16g00286 500 ProSiteProfiles Protein kinase domain profile. 101 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00286 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - zju:107404513 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00286 Blo-Chr16:6831496 Blo07g00189 Blo-Chr7:2361335 3.50E-148 dispersed
Blo16g00286 Blo-Chr16:6831496 Blo02g00578 Blo-Chr2:10643580 3.14E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g47 . Blo16g00286 . . . Bpe13g00189 . . . Cmo18g00235 . . . . . Cpe20g00292 . . . . . . . . . . . . . . . . . Cone13ag0248 Cone19ag0228 Lsi02g00524 Csa01g00986 Chy12g01147 Cme12g01566 . . Bda11g01584 . . . . . . . . Cma13g00826 Cma18g00299 Car13g00669 . Cpe09g00946 . Bhi08g01533 . . . . . . Cla03g00375 Cam03g0395 Cec03g0381 Cco03g0396 Clacu03g0394 Cmu03g0999 Cre03g0691 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008225 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 0 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84736 PF00069 Pkinase 7.00E-18 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00286 Blo_Chr16 FPKM 66.727333 67.870178 32.368332 32.754581 64.89801 63.726299 61.92548 53.453087 50.811497 47.385933