Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00289 ATGCTGCCTCGATTAAACGGAGTGGTTTGGATGGAAGGCGGAGAAGACGAAGACTCTGCTTCGTGGGTTAGAAACAAGGGTGTCTCCACCGGCGGCGATGGCCAGCTCAACGGCGTCCACTGCGGTGATTTGGAGAACAAGGAGGAGATGAATTCTCTCTCCACCTTCAAATCTATGCTTGATGTGGAAGATGAATGGTACGTTTCTTGCAATAATCTTCAACCTCGGGGAGAAATTAGAGACATTCCGTTTTCGCAGTCCCTAGCTGATCCAGATAACCTTCTGCTCCATCCAGTGGATTCTTCGTCTTCCTGCTCTCCTTCTTCTTCGATGTTCAACAATCTCGACCCTTCACAGGTACATTATCTTTTGCCACCCAAACCTAATTTAGCTTCTCTCTTCAACGTCGTTTCTGCTACTCCTCTAGACCATGGATTTGATTTAGCTCCTGAAGTTGAGTTTCTCGAAACCCATACTTCGAATGCTGGTAATTTGCTCAACAGAGGAGCTGGGGTTCTAACTGGTTTTCCTGAAATCGGGCCGAATAACCAAATGGGTGCCCACACTTTGTATCCGGATCCTCAATTCACGGCCACCCAAATGCCGGAAAATTCATCTGGTTTCGCCGGATTTCGGAGTTTTGAAGAGAATTCTGGAAATGATGTGTTTCTAAGTAGGTCAAAATTACTGAGGCCCCTTGAATCATTCCCCTCAGCTGGGGCTCAGCCAACTCTTTTCCAGAAAAGGGTGGCTCTGAGAAAAAGTCTGGCTGGCGGCGCTTGTGGTTCGGACGAGATCGAGGACGATAACAACGAGATCAGAAAATTGGTCGAACTGAGCGATAGGAAGAGGAAATTGGGCAGTGTAGACGATTTCGAAAACGGAAGCATTGATGGGTCTGGCTTGAATTATGATTCAGACGAGTTTACAGAGTACAAGGCGGAGGAGAATGCTAGAAATGGTGGGAACAGCTCAAATGCCAACAGTACTGTAACTGGAGGTGACCATAAAGGGAAGAAGAAGGGTCTTCCGGCCAAGAATTTGATGGCTGAACGGCGACGGAGGAAGAAGCTCAATGACAGGCTGTACATGCTGAGATCTGTAGTTCCAAAAATAAGCAAAATGGATAGGGCCTCAATCCTTGGGGATGCAATTGAGTACTTGAAGGAACTCTTGCAAAGGATCAATGATTTGCACAACGAATTGGAGTCAACCCCGCCCGGCTCTACCTTGACGCCCACTACCAGCTTCCATCCTCTAACCCCGACTCCACCAAGTTTGCCGGGACGGATTAAGGAGGAAGCCTGCCCCAGCTCATTGTCGAGTCCAAACGGCCAACCTGCCAGGGTGGAAGTTAGGGTGAGGGAAGGAAGGGCTGTGAACATTCACATGTTTTGCGGGCGGAGTCCGGGTCTGCTACTCTCGACTATGAGAGTATTGGATAATCTGGGATTAGAAATCCAACAAGCTGTCATCAGCTGTTTCAATGGTTTTGCTATGGACATCTTTCGAGCGGAGGTAAACCTCAAGGATGGGCAGGAGATCCATCCGGAGCAAATAAAAGCCATACTTCTGGAGTCGGCTGGTTTCCATGGTATGATTTAG 1605 48.29 MLPRLNGVVWMEGGEDEDSASWVRNKGVSTGGDGQLNGVHCGDLENKEEMNSLSTFKSMLDVEDEWYVSCNNLQPRGEIRDIPFSQSLADPDNLLLHPVDSSSSCSPSSSMFNNLDPSQVHYLLPPKPNLASLFNVVSATPLDHGFDLAPEVEFLETHTSNAGNLLNRGAGVLTGFPEIGPNNQMGAHTLYPDPQFTATQMPENSSGFAGFRSFEENSGNDVFLSRSKLLRPLESFPSAGAQPTLFQKRVALRKSLAGGACGSDEIEDDNNEIRKLVELSDRKRKLGSVDDFENGSIDGSGLNYDSDEFTEYKAEENARNGGNSSNANSTVTGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSTLTPTTSFHPLTPTPPSLPGRIKEEACPSSLSSPNGQPARVEVRVREGRAVNIHMFCGRSPGLLLSTMRVLDNLGLEIQQAVISCFNGFAMDIFRAEVNLKDGQEIHPEQIKAILLESAGFHGMI 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6960858 6963006 + BLOR07537 Blo16g00289 71480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00289 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 412 IPR036638 GO:0046983
Blo16g00289 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Blo16g00289 534 PANTHER BHLH TRANSCRIPTIONAL FACTOR 100 534 - -
Blo16g00289 534 Pfam Helix-loop-helix DNA-binding domain 349 391 IPR011598 GO:0046983
Blo16g00289 534 Gene3D - 336 405 IPR036638 GO:0046983
Blo16g00289 534 MobiDBLite consensus disorder prediction 315 346 - -
Blo16g00289 534 Coils Coil 381 405 - -
Blo16g00289 534 MobiDBLite consensus disorder prediction 317 333 - -
Blo16g00289 534 CDD bHLH_AtAMS_like 345 409 - -
Blo16g00289 534 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 100 534 - -
Blo16g00289 534 SMART finulus 348 397 IPR011598 GO:0046983
Blo16g00289 534 CDD ACT_UUR-ACR-like 462 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00289 - - - vvi:100245749 676.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00575 Blo-Chr4:4932599 Blo16g00289 Blo-Chr16:6960858 1.71E-24 dispersed
Blo11g00599 Blo-Chr11:5911159 Blo16g00289 Blo-Chr16:6960858 7.77E-118 dispersed
Blo16g00289 Blo-Chr16:6960858 Blo17g00087 Blo-Chr17:677593 5.87E-24 dispersed
Blo18g00096 Blo-Chr18:810869 Blo16g00289 Blo-Chr16:6960858 5.85E-10 dispersed
Blo16g00289 Blo-Chr16:6960858 Blo12g00741 Blo-Chr12:25767279 3.90E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g28 . Blo16g00289 . . . . Bma06g00283 . . Cmo18g00238 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00527 Csa01g00990 Chy12g01144 Cme12g01562 . . Bda11g01575 . . . . . Sed08g2407 . . . Cma18g00292 Car13g00673 Car18g00249 Cpe09g00942 . Bhi08g01538 Tan05g3011 Cmetu06g0036 Lac10g0613 Hepe07g2082 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011005 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13388 PF00010 HLH 2.00E-09 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00289 Blo_Chr16 FPKM 7.159509 6.523298 10.810496 9.432667 32.451565 31.016138 34.605167 9.727914 7.939064 8.575182