Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00293 ATGGCTAGAAAGAGAGGTGAAGGGAAAGAGGTGGCTGGAGAAGACAGAGTCGGTTGCGAAGAATTCAGGAGGAAGCTAGGAAATTTTCGTGATGAGTTTTCACAAGGTTTGGACTCGTTGAAGGCAGACGTAGCGGCACTGCAAACCTTGAAGGCTGATATGGCATTTGTACTCGAGTCGTTGGCGTCTTTGAAGATGGCACGCGACGAACCTCGAGCTGGAAATTTGCGCGACGCTGGGGAATCGCGCGATGAGTTGCGCACTACTCTGCCGCGCAGCGAGCTTCGGGCGACAGAAGATGGAACTCGTTCAGGAGCTGGGCGGAACTCGTCCAAGAGCTGGGCTTGCTCTTCACGCAGAAGTGGAATGCTCTCAGGAAGAGATGGAGCAATGAAAGAGCTTGGCCGCACTGAGATAATTATAGATTCACCAAATCCCAAATGGACCTCTAAACTTACTATGATTTATCATTTTGAAGTTGTTCAGATGCTGATGTTTCAGGTGTACAATGTTGACTCTGTCTTTCACAATGCAGATGTCACGATGCTGAAACTTGATGAGCAGCTTTATCTTGGAGAAGCAACTTGTGCATTAGCTGAGATAGTTACTAAATCAGATAGGTCACTGACATTAGATCTTGTGCATGTTGTGGAGCCTGTGCAATCAAGTGATTCTGTTTGTTGTGGAAAGCTTATTATCCATGCTGAGGAATGTGTTAACTCCAAGACTACCGTGGAGTTAATGTTAAGGTGTACAGATTTGGAATACAAGGATCTCTTTTCAAGAAGTGACCCTTTTTTAATAATATCGAAGTTTGTGGACAGTAAGATTCCAATTCCACTGTGCAAAACAGAAGTCATAAAGAATGATCAAAATCCATCATGGAAGTCAGTATACTTGACTATCCAACAAGTGGGAAGTAAGGTAGAAGCTAAGAAAATATTAATTTCTTGTTTTATTAATTTTTTGTTAATTAATCTGCAGGACAGTCCATTATTAATTGAGTGCTTTAACTTCAACAGCAATGGAAAACATGATTTGATTGGAAAAGTTCAACTATCAATAACAGAGTTGGAAAAGCTTTTTAGTAGCGGACAAGGAGCCAATTTATTTTTGCCGGACACCGTTGGACATGATTATGATGGCAAAAGACTAAAGAGCCAGCTATTTGTGGATAAGCTTTCTGAGGGTATCCAACAAACGTTCCTGGATTACCTGGTCAAGGGATGTGAAATGAACCTCATGGTGGCTGTTGATTTTACAGCCACATCATTGGATACAAAACGAACATCAGTTCTCTATCTTTGCCTGTCAGCATCTAATGGAAACCCCCGTCTCCCTGATTCCTTGCATTTCATTGACCCTTCAGGACGACCCAATGCATACCAGAAAGCTATTTTGGAAGTTGGAGAGGTGTTGCAGTTTTATAATTCTAGAAAGCGTTTTCCAGCCTGGGGATTTGGAGCTCGACCAATTGATGGTCCAGTCTCGCATTGTTTCAATCTGAATGGAAGTAATCACCAATGTGAGGTTGAAGGAATCCAAGGAATAATGATGGCTTATGCAAGTGCTCTGCTTAATGTGTCTCTTGCTGGGCCAACTCTTTTCGGACCACTTATTAGCAATGCTGCACTAATTGCCAGCCAATCTCTTGCAAATGACAGACCGAAATATTTCATTTTGTTGATAATCACGGATGGAGTAGTGACTGACCTCCAAGAAACTAAAGATGCCATTGTCAAGGCTTCTGACCTTCCATTGTCAATTCTCATTTTTGGAGTTGGTGGAGCAGATTTTAAAGAAATGGAGGTGTTCGATGCAGACAAGGGAGAGGCGCTTGAAAACTCAACGGGTCGTGTTGCTTCCCGTGATATCGTTCAGTTTATTCCGTTTCAAAATGCGCAGAGTGGGGAGACATCTCCCGTCGTTCAAGCTCTTCTAGCTGAATTACCAACCCGATTTCTTAGCTACTTGAGAAGTAGAAACATTCAACCAAACTAG 2001 42.73 MARKRGEGKEVAGEDRVGCEEFRRKLGNFRDEFSQGLDSLKADVAALQTLKADMAFVLESLASLKMARDEPRAGNLRDAGESRDELRTTLPRSELRATEDGTRSGAGRNSSKSWACSSRRSGMLSGRDGAMKELGRTEIIIDSPNPKWTSKLTMIYHFEVVQMLMFQVYNVDSVFHNADVTMLKLDEQLYLGEATCALAEIVTKSDRSLTLDLVHVVEPVQSSDSVCCGKLIIHAEECVNSKTTVELMLRCTDLEYKDLFSRSDPFLIISKFVDSKIPIPLCKTEVIKNDQNPSWKSVYLTIQQVGSKVEAKKILISCFINFLLINLQDSPLLIECFNFNSNGKHDLIGKVQLSITELEKLFSSGQGANLFLPDTVGHDYDGKRLKSQLFVDKLSEGIQQTFLDYLVKGCEMNLMVAVDFTATSLDTKRTSVLYLCLSASNGNPRLPDSLHFIDPSGRPNAYQKAILEVGEVLQFYNSRKRFPAWGFGARPIDGPVSHCFNLNGSNHQCEVEGIQGIMMAYASALLNVSLAGPTLFGPLISNAALIASQSLANDRPKYFILLIITDGVVTDLQETKDAIVKASDLPLSILIFGVGGADFKEMEVFDADKGEALENSTGRVASRDIVQFIPFQNAQSGETSPVVQALLAELPTRFLSYLRSRNIQPN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7077974 7085825 + BLOR07541 Blo16g00293 71484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00293 666 MobiDBLite consensus disorder prediction 72 125 - -
Blo16g00293 666 CDD C2B_Copine 245 360 IPR037768 -
Blo16g00293 666 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 248 360 IPR035892 -
Blo16g00293 666 PANTHER COPINE 328 665 IPR045052 GO:0005544
Blo16g00293 666 Gene3D C2 domain 123 226 IPR035892 -
Blo16g00293 666 MobiDBLite consensus disorder prediction 72 101 - -
Blo16g00293 666 Gene3D C2 domain 243 369 IPR035892 -
Blo16g00293 666 SMART C2_3c 248 367 IPR000008 -
Blo16g00293 666 SMART C2_3c 65 210 IPR000008 -
Blo16g00293 666 CDD vWA_copine_like 382 654 IPR010734 -
Blo16g00293 666 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 128 215 IPR035892 -
Blo16g00293 666 Pfam Copine 449 665 IPR010734 -
Blo16g00293 666 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 125 319 - -
Blo16g00293 666 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 328 665 - -
Blo16g00293 666 MobiDBLite consensus disorder prediction 103 120 - -
Blo16g00293 666 Pfam C2 domain 133 206 IPR000008 -
Blo16g00293 666 Pfam C2 domain 249 359 IPR000008 -
Blo16g00293 666 SUPERFAMILY vWA-like 410 611 IPR036465 -
Blo16g00293 666 ProSiteProfiles C2 domain profile. 227 372 IPR000008 -
Blo16g00293 666 PANTHER COPINE 125 319 IPR045052 GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00293 - - - qsu:112013968 765.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00340 Blo-Chr10:5108356 Blo16g00293 Blo-Chr16:7077974 0 dispersed
Blo10g00341 Blo-Chr10:5120268 Blo16g00293 Blo-Chr16:7077974 1.57E-138 dispersed
Blo11g00819 Blo-Chr11:13511003 Blo16g00293 Blo-Chr16:7077974 3.37E-35 dispersed
Blo13g00219 Blo-Chr13:9113777 Blo16g00293 Blo-Chr16:7077974 9.27E-09 dispersed
Blo16g00293 Blo-Chr16:7077974 Blo18g00673 Blo-Chr18:13206520 9.27E-39 dispersed
Blo17g00312 Blo-Chr17:3289629 Blo16g00293 Blo-Chr16:7077974 2.21E-17 dispersed
Blo16g00293 Blo-Chr16:7077974 Blo16g00840 Blo-Chr16:35364782 2.96E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00293 Blo_Chr16 FPKM 8.172065 8.440142 11.553229 10.143529 8.872299 6.821234 6.825104 16.259752 15.5047 17.720659