Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00310 ATGTCTCCGGCGACTAACTGGCTGTCGTTCTCTTTATCTCCGGTTGAGATGATGAGGTCATCTGCTGAATCGCCGTTCATGCCCTACGAGACCTCTTCTACTGCTTCTCCTCACTATCTGCTCGATAACTTCTATGCGAATGGCTGGGCAAATCCCAAACAAGTTCAAGCTTCTACTGATTCCCCTATTCTGACTAGCTTCCTTGATCATCATACCCAGAACCAAGGAGTGCCGAAACTGGAAGACTTTCTGGGCGACTCGTCGCTGATGATTCGATATTCCGAAAGCCAAACGGCGACTCAAGACTCGTCTTTAACTCAAATATACGACCATGGTTCGACATACTTTAACGACCACCAAGATCTCAAAGCGGTTGCCGGGTTTCAAGCATTTTCAGCCAACTCGGGTTCAGAAGTGGATGACTCGACCTCCATCGCTCGGAACCAGCTCGCCTGCGGCGAGTTCGCCGGTCATTCTATGGACTCATCCGGCACCGAGTTAGCTTTTAGCAACTGTTCTACCGGTGCTCTGTCACTTGGGGTTGCTCGGTGCTCCGAGAAAGCAGTTGTTTCGGTAGTGTCTGATAGCTCGAAGAAGATTGCCGACACCTACGGCCAGCGAACTTCGATTTACAGAGGTGTTACTAGACACAGATGGACTGGTAGATACGAAGCCCATCTATGGGATAACAGTTGTCGAAGAGAAGGTCAAGCTAGAAAAGGGCGTCAAGGTGGATATGACAAAGAAGATAAGGCAGCAAGGGCTTATGATTTAGCAGCTTTGAAATACTGGGGCCCTACCGCCACCACCAACTTTGCTGTCTCAAATTACACCAAAGAATTGGAGGAGATGAAACTCGTGACCAAGCAAGAATTCATTGCATCTCTTAGAAGGAAAAGTAGCGGTTTTTCAAGGGGAGCTTCGATTTATCGAGGGGTGACGAGGCACCATCAGCAGGGAAGGTGGCAGGCGAGAATAGGCCGTGTTGCCGGGAATAAGGATCTGTACCTCGGGACCTTTGCCACAGAAGAGGAGGCTGCAGAAGCTTACGACATTGCAGCCATAAAGTTCAGAGGTTTAAATGCGGTGACGAACTTTGAGATGGGACGATATGATGTGGAAGCTATTTCGAAGAGTAATCTACCCATCGGAGGAGCAGCTAAACGGTTAAAGCTCTCACTCGAATCCGAACAAAAGCAGTCTATTTTACACCATAATTTACAGCCATCGAGCCTAAGTGCCGGGAACAACATAAGTTTCGGCCCAATCCAACCCGCCCCGGCTATCCCATGTGGAATCCCGTATGGTGCTTCCACTTCGATGCTTTATCATCACAACCTATTCCACCACCACCAAACCAATGGCCTTGGCACTTCCAGCTCAACTTCTAACCCTCTTATGGCGGCTCCAATGAATCCGATGCCCCAGCAGGCTGAGTTTTTCTTCTGGCCCCATGAGTCCTACTGA 1467 49.28 MSPATNWLSFSLSPVEMMRSSAESPFMPYETSSTASPHYLLDNFYANGWANPKQVQASTDSPILTSFLDHHTQNQGVPKLEDFLGDSSLMIRYSESQTATQDSSLTQIYDHGSTYFNDHQDLKAVAGFQAFSANSGSEVDDSTSIARNQLACGEFAGHSMDSSGTELAFSNCSTGALSLGVARCSEKAVVSVVSDSSKKIADTYGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFAVSNYTKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGAAKRLKLSLESEQKQSILHHNLQPSSLSAGNNISFGPIQPAPAIPCGIPYGASTSMLYHHNLFHHHQTNGLGTSSSTSNPLMAAPMNPMPQQAEFFFWPHESY 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7708927 7712475 + BLOR07558 Blo16g00310 71501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00310 488 PRINTS Ethylene responsive element binding protein signature 211 222 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 PRINTS Ethylene responsive element binding protein signature 349 369 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 SUPERFAMILY DNA-binding domain 308 368 IPR016177 GO:0003677
Blo16g00310 488 ProSiteProfiles AP2/ERF domain profile. 309 367 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 CDD AP2 209 275 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 Gene3D AP2/ERF domain 210 275 IPR036955 GO:0003700|GO:0006355
Blo16g00310 488 Gene3D AP2/ERF domain 309 368 IPR036955 GO:0003700|GO:0006355
Blo16g00310 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 186 485 - -
Blo16g00310 488 SMART rav1_2 210 279 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 SMART rav1_2 309 373 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 Pfam AP2 domain 309 359 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 Pfam AP2 domain 210 265 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 182 - -
Blo16g00310 488 ProSiteProfiles AP2/ERF domain profile. 210 273 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 SUPERFAMILY DNA-binding domain 209 275 IPR016177 GO:0003677
Blo16g00310 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 186 485 - -
Blo16g00310 488 CDD AP2 308 367 IPR001471 GO:0003700|GO:0006355
Blo16g00310 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00998 Blo-Chr12:27991434 Blo16g00310 Blo-Chr16:7708927 2.90E-88 dispersed
Blo16g00310 Blo-Chr16:7708927 Blo04g01123 Blo-Chr4:18182477 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13392 PF00847 AP2 1.10E-08 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00310 K09285 - qsu:112018242 708.368