Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo16g00400 | ATGCCAAAGAGAGACCCGACAAGAATACACCCAGATGAAGGTGACCTATGCGCTGATCTGCTTCATCTTCTCTGTCTTTACCCTCCAATTCCCAATACCCAGCCTCTGCAACATTATGGGACCCCGAAAAACCTCTCCATTGAATTAAAAAATCCAGACCCAGCTGTGGAAAAGTATCGGATGGACGGGGAAGACGAAGTGAGAGATGCCACGCCGAAAAAGAGAGGAAAGGATAATCAGAGGCCGTACAAAGGGATTCGAATGAGAAAATGGGGGAAATGGGTGGCTGAGATTCGAGAACCGAATAAACGCTCTAGAATATGGCTCGGTTCTTACTCTTCGCCAGTGGCGGCGGCTAGGGCTTACGACACCGCCGTTTTCCACCTCAGAGGCCCATCGGCGCGCCTTAACTTCCCGGAGCTATTAGCGGCGGAAGGATGTGGGATTTACACCGGGGACGACATGTCGGCCGCTACAATAAGGAAGAAAGCCGCGGAGGTTGGAGCGAGAGTGGATGCTATCGAGAGTTCTCAGCACTACGATCGACCGTCGTGCGCGGTGGTTCCGCCATCGTTAAAGAGCGGCAGTGGGTTCTCAGATCGGGTCGATTTGAACAAGGTGCCCGACCTGGAAGAGTCGGAGGGAGAGCGACCGTGTATAGGAGATTAG | 669 | 53.06 | MPKRDPTRIHPDEGDLCADLLHLLCLYPPIPNTQPLQHYGTPKNLSIELKNPDPAVEKYRMDGEDEVRDATPKKRGKDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAAEGCGIYTGDDMSAATIRKKAAEVGARVDAIESSQHYDRPSCAVVPPSLKSGSGFSDRVDLNKVPDLEESEGERPCIGD | 222 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 14566956 | 14567929 | + | BLOR07648 | Blo16g00400 | 71591 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo16g00400 | 222 | MobiDBLite | consensus disorder prediction | 204 | 222 | - | - | |
Blo16g00400 | 222 | MobiDBLite | consensus disorder prediction | 191 | 222 | - | - | |
Blo16g00400 | 222 | SMART | rav1_2 | 82 | 145 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g00400 | 222 | SUPERFAMILY | DNA-binding domain | 83 | 140 | IPR016177 | GO:0003677 | |
Blo16g00400 | 222 | PRINTS | Ethylene responsive element binding protein signature | 83 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g00400 | 222 | PRINTS | Ethylene responsive element binding protein signature | 121 | 141 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g00400 | 222 | ProSiteProfiles | AP2/ERF domain profile. | 82 | 139 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g00400 | 222 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 | 70 | 214 | - | - | |
Blo16g00400 | 222 | Gene3D | AP2/ERF domain | 82 | 140 | IPR036955 | GO:0003700|GO:0006355 | |
Blo16g00400 | 222 | CDD | AP2 | 83 | 141 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g00400 | 222 | Pfam | AP2 domain | 83 | 131 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g00400 | 222 | MobiDBLite | consensus disorder prediction | 59 | 81 | - | - | |
Blo16g00400 | 222 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 70 | 214 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo04g01061 | Blo16g00400 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g01437 | Blo-Chr1:53220672 | Blo16g00400 | Blo-Chr16:14566956 | 8.21E-21 | dispersed | |
Blo16g00400 | Blo-Chr16:14566956 | Blo18g00657 | Blo-Chr18:12325563 | 3.28E-54 | dispersed | |
Blo16g00400 | Blo-Chr16:14566956 | Blo04g01061 | Blo-Chr4:15228463 | 2.02E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13401 | PF00847 | AP2 | 1.70E-10 | CL0081 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo16g00400 | K09286 | - | csv:101214481 | 212.231 |