Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00400 ATGCCAAAGAGAGACCCGACAAGAATACACCCAGATGAAGGTGACCTATGCGCTGATCTGCTTCATCTTCTCTGTCTTTACCCTCCAATTCCCAATACCCAGCCTCTGCAACATTATGGGACCCCGAAAAACCTCTCCATTGAATTAAAAAATCCAGACCCAGCTGTGGAAAAGTATCGGATGGACGGGGAAGACGAAGTGAGAGATGCCACGCCGAAAAAGAGAGGAAAGGATAATCAGAGGCCGTACAAAGGGATTCGAATGAGAAAATGGGGGAAATGGGTGGCTGAGATTCGAGAACCGAATAAACGCTCTAGAATATGGCTCGGTTCTTACTCTTCGCCAGTGGCGGCGGCTAGGGCTTACGACACCGCCGTTTTCCACCTCAGAGGCCCATCGGCGCGCCTTAACTTCCCGGAGCTATTAGCGGCGGAAGGATGTGGGATTTACACCGGGGACGACATGTCGGCCGCTACAATAAGGAAGAAAGCCGCGGAGGTTGGAGCGAGAGTGGATGCTATCGAGAGTTCTCAGCACTACGATCGACCGTCGTGCGCGGTGGTTCCGCCATCGTTAAAGAGCGGCAGTGGGTTCTCAGATCGGGTCGATTTGAACAAGGTGCCCGACCTGGAAGAGTCGGAGGGAGAGCGACCGTGTATAGGAGATTAG 669 53.06 MPKRDPTRIHPDEGDLCADLLHLLCLYPPIPNTQPLQHYGTPKNLSIELKNPDPAVEKYRMDGEDEVRDATPKKRGKDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAAEGCGIYTGDDMSAATIRKKAAEVGARVDAIESSQHYDRPSCAVVPPSLKSGSGFSDRVDLNKVPDLEESEGERPCIGD 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 14566956 14567929 + BLOR07648 Blo16g00400 71591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00400 222 MobiDBLite consensus disorder prediction 204 222 - -
Blo16g00400 222 MobiDBLite consensus disorder prediction 191 222 - -
Blo16g00400 222 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Blo16g00400 222 SUPERFAMILY DNA-binding domain 83 140 IPR016177 GO:0003677
Blo16g00400 222 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Blo16g00400 222 PRINTS Ethylene responsive element binding protein signature 121 141 IPR001471 GO:0003700|GO:0006355
Blo16g00400 222 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Blo16g00400 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 70 214 - -
Blo16g00400 222 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Blo16g00400 222 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Blo16g00400 222 Pfam AP2 domain 83 131 IPR001471 GO:0003700|GO:0006355
Blo16g00400 222 MobiDBLite consensus disorder prediction 59 81 - -
Blo16g00400 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 70 214 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g01061 Blo16g00400 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01437 Blo-Chr1:53220672 Blo16g00400 Blo-Chr16:14566956 8.21E-21 dispersed
Blo16g00400 Blo-Chr16:14566956 Blo18g00657 Blo-Chr18:12325563 3.28E-54 dispersed
Blo16g00400 Blo-Chr16:14566956 Blo04g01061 Blo-Chr4:15228463 2.02E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13401 PF00847 AP2 1.70E-10 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00400 K09286 - csv:101214481 212.231