Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00405 ATGTGGGATCTAAATGACTCGCCTGATCAGAAAAGAGACGGCGAATCCGATGGCTGTTCTTCCCCCAAGACTTCAATCGACGGCGACGACGACAAAGGAAAACGGGTGGGATCCTTTTCTAATTCCAGTTCTTCTGCAGTTGTAATAGAGGACGGATACGACGAAGAGGGCGGCGATAAAGAAGCGGTTGCCGAGAAAGGTAGCCGGAGAAGTAAGTTATTTGGGCTTTCAACGGCTCAGGACTGCATGGAAACGGACCATCCGGTGACACGGCAGTTTTTTCCCTTGGAAGAGTCCGAAGTGGAAGCGTCTCCTATGGGAGATGGCAACGGTGGCTCTTCGTTCCCTCGCGCTCGCTGGGTTGGGGTAAAATTCTGTCAGACGGAGCCTCTCTCTGCCACTAGGTCGTCGGCGGAGGCGGAGACATCACCGCCAATGAAAAAGAGTCGACGAGGGCCGAGGTCCCGTAGCTCTCAGTATCGTGGCGTCACGTTCTACCGGAGAACTGGTCGGTGGGAATCGCATATTTGGTTAGTTCTTCTCACAGTCTCTTTCTACCACTTTACTTTTTTTTTTCGCTTTGGGGATTGTGGGAAACAAGTCTATCTAGGTGGATTTGACACTGCACATGCAGCTGCTCGAGCTTACGATAGGGCAGCCATTAAATTTCGAGGAACAGAAGCTGACATAAATTTTAGCATCTACGACTATGAAGACGATCTAAAACAGATGAGCAACTTGACGAAGGAAGAGTTTGTTCATGTTCTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAGTTTCTTGGCAAAAAGTATGTGTATTTGGGTTTGTTTGATACCGAGATTGAAGCTGCAAAGGCTTATGATAAAGCTGCCATTAAGTCTAATGGTAAAGACGCTGTCACCAACTTTGACCCAAGCATATACGAGAATGAGCTCAATGGAAATGGTACTGAAAATCTAGCAGCGGAACATAATCTTGATTTGAGTTTAGGAAGCTCAAGCGCGAATCAAAGCAGTTTACCATTAGAGAATAATGGCAGAAACTTTGCACATCTATCTGTTCCGTTCCCATTTAAATCGGATTGGCAAAACCAAGGATTTAGACATCAGGTTTATACTTTGGGTGGGAGTGGAAATGAGTATATTCATGGTAGAGAGAGAAGTCTGGAGAATCAAACCATGCAGCTTCTCAGCCAAACCCATCTTCAACCTCATGATTACACTAATCCAGAGCTAAGACCACAAAATTATCAAACCCAGTTTTTAAGCAGCAGCAGCAATGGAGGTCGAGTTGGAAGTGATCTTTCACTGTCAATGAACGACCAACAATGGCGATCCAGTTCTTCCCGACAGTTTGCAGTTGCTGCAGCATCATCAGGATTCCCTCCCCAAATTAGATCAACTTTCCAGAATCATTTTCTGCATACCAATGGATTTAACTCTCTTGTGAGACCCTCTTAA 1527 46.1 MWDLNDSPDQKRDGESDGCSSPKTSIDGDDDKGKRVGSFSNSSSSAVVIEDGYDEEGGDKEAVAEKGSRRSKLFGLSTAQDCMETDHPVTRQFFPLEESEVEASPMGDGNGGSSFPRARWVGVKFCQTEPLSATRSSAEAETSPPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLVLLTVSFYHFTFFFRFGDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIYDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKSNGKDAVTNFDPSIYENELNGNGTENLAAEHNLDLSLGSSSANQSSLPLENNGRNFAHLSVPFPFKSDWQNQGFRHQVYTLGGSGNEYIHGRERSLENQTMQLLSQTHLQPHDYTNPELRPQNYQTQFLSSSSNGGRVGSDLSLSMNDQQWRSSSSRQFAVAAASSGFPPQIRSTFQNHFLHTNGFNSLVRPS 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 14951967 14954728 + BLOR07653 Blo16g00405 71596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00405 508 SMART rav1_2 269 332 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 SMART rav1_2 159 239 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 506 - -
Blo16g00405 508 Pfam AP2 domain 159 225 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 Pfam AP2 domain 268 315 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 ProSiteProfiles AP2/ERF domain profile. 269 326 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 SUPERFAMILY DNA-binding domain 158 234 IPR016177 GO:0003677
Blo16g00405 508 ProSiteProfiles AP2/ERF domain profile. 159 233 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 CDD AP2 268 328 IPR001471 GO:0003700|GO:0006355
Blo16g00405 508 MobiDBLite consensus disorder prediction 1 68 - -
Blo16g00405 508 MobiDBLite consensus disorder prediction 1 36 - -
Blo16g00405 508 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 506 - -
Blo16g00405 508 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Blo16g00405 508 MobiDBLite consensus disorder prediction 132 157 - -
Blo16g00405 508 Gene3D AP2/ERF domain 158 235 IPR036955 GO:0003700|GO:0006355
Blo16g00405 508 Gene3D AP2/ERF domain 268 327 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01054 Blo-Chr4:14959646 Blo16g00405 Blo-Chr16:14951967 0 dispersed
Blo05g00626 Blo-Chr5:18666042 Blo16g00405 Blo-Chr16:14951967 8.52E-150 dispersed
Blo14g00149 Blo-Chr14:1129907 Blo16g00405 Blo-Chr16:14951967 1.35E-57 dispersed
Blo16g00405 Blo-Chr16:14951967 Blo01g01486 Blo-Chr1:54305900 5.22E-09 dispersed
Blo16g00405 Blo-Chr16:14951967 Blo13g01099 Blo-Chr13:33141228 8.70E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13402 PF00847 AP2 3.10E-07 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00405 K09284 - qsu:111995790 559.681