Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00414 ATGCCCAAAAAACTCTTTAGTGAATCGAAGAAACGAGGTGGCTTCAACAAATTGTGTGGCCTTTCCCCACAACTACAAGAATTTACCGGGGCGTCTGAAATGGCTAGAACTGAGGTCGTGAAGAAACTATGGGCGTACATTAGAGAAAAGGAGTTGCAAAACCCAAATGATAAGCGAAATATATTATGTGATGATGCATTGCATACCCTCTTTGGTGTCAAGTCCATCAATATGTTTCAAATGAACAAGGCTCTTACGAAGCATATTTGGCCCCTGGAATCTGATGCAGTTGTTCGAGTAAAGTCAACGCAGAAGGAAAAACCTAGGAAACAAGAGAGAGAAAAAGATTCAGATGAACCAAAAGGTAAAAAACGGCACAAGAGTGGGACCTCAGGATTTCTTGCTCCTCTTCAACTATCAGATGCTTTAATAAAATTTCTTGGTACGGGGGAAAGTGCATTATCACGGGCGGATACTGTCAAACGAATGTGGGAATACATAAAGGAAAACAACCTCCAGGATCCATCGGACAAGAGGAGAGTAATATGTGATGAGAAACTAAAAGAATTATTCAGTGTAGATTCTTTTAATGGCTTCACGGTGTCAAAACTTCTTTCGGCGCACTTTGTAAAGACAAAGCGATCTCCTCTCCGAACCCTCCTCCTCTCCGAAGGCGAAGTGATCTTCTTGCGAGGCGAGCTACCACCCGACGCGCAGCGAGCTGCATCCCGACGAGAGGCGAGCTCCGACCTCCCACTGCGAACCGAGGCGAGGTGCGACCTACCGCTGCGAACCGAGTTGGGCGAGTTGGGCAACGCCTGCTTGCGAATCGACCTCCGATTCAGCTGGGCGACCTCCGACTGA 864 46.99 MPKKLFSESKKRGGFNKLCGLSPQLQEFTGASEMARTEVVKKLWAYIREKELQNPNDKRNILCDDALHTLFGVKSINMFQMNKALTKHIWPLESDAVVRVKSTQKEKPRKQEREKDSDEPKGKKRHKSGTSGFLAPLQLSDALIKFLGTGESALSRADTVKRMWEYIKENNLQDPSDKRRVICDEKLKELFSVDSFNGFTVSKLLSAHFVKTKRSPLRTLLLSEGEVIFLRGELPPDAQRAASRREASSDLPLRTEARCDLPLRTELGELGNACLRIDLRFSWATSD 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16089647 16095056 - BLOR07662 Blo16g00414 71605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00414 287 Pfam SWIB/MDM2 domain 136 209 IPR003121 -
Blo16g00414 287 Pfam SWIB/MDM2 domain 18 89 IPR003121 -
Blo16g00414 287 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 10 212 - -
Blo16g00414 287 SUPERFAMILY SWIB/MDM2 domain 130 212 IPR036885 -
Blo16g00414 287 MobiDBLite consensus disorder prediction 100 126 - -
Blo16g00414 287 CDD SWIB-MDM2_like 19 89 - -
Blo16g00414 287 CDD SWIB-MDM2_like 137 209 - -
Blo16g00414 287 Gene3D SWIB/MDM2 domain 126 216 IPR036885 -
Blo16g00414 287 Gene3D SWIB/MDM2 domain 8 97 IPR036885 -
Blo16g00414 287 ProSiteProfiles SWIB/MDM2 domain profile. 132 211 IPR003121 -
Blo16g00414 287 ProSiteProfiles SWIB/MDM2 domain profile. 14 91 IPR003121 -
Blo16g00414 287 MobiDBLite consensus disorder prediction 100 132 - -
Blo16g00414 287 SMART swib_2 133 214 IPR019835 -
Blo16g00414 287 SMART swib_2 15 94 IPR019835 -
Blo16g00414 287 PANTHER YTH DOMAIN-CONTAINING PROTEIN 1 ISOFORM X1 10 212 - -
Blo16g00414 287 SUPERFAMILY SWIB/MDM2 domain 10 93 IPR036885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo06g00008 Blo16g00414 CCT
Blo06g00008 Blo16g00414 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00535 Blo-Chr3:20627580 Blo16g00414 Blo-Chr16:16089647 1.52E-15 dispersed
Blo03g01462 Blo-Chr3:41240347 Blo16g00414 Blo-Chr16:16089647 1.67E-13 dispersed
Blo12g00299 Blo-Chr12:17641989 Blo16g00414 Blo-Chr16:16089647 4.20E-15 dispersed
Blo16g00072 Blo-Chr16:2065051 Blo16g00414 Blo-Chr16:16089647 5.66E-08 dispersed
Blo16g00414 Blo-Chr16:16089647 Blo02g00591 Blo-Chr2:11306131 5.07E-22 dispersed
Blo15g00209 Blo-Chr15:2142566 Blo16g00414 Blo-Chr16:16089647 7.08E-06 transposed
Blo16g00414 Blo-Chr16:16089647 Blo04g01032 Blo-Chr4:13956494 9.13E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13404 PF02201 SWIB 4.50E-27 No_clan Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00414 K15223 - qsu:112016262 322.013