Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00472 ATGGATTTTGATCGCATTGAAAGCTTGCCATCGTCGGATGCGATGGACGAGGGCGAGATCCATCAACATCGTCGTCAGTTTTCTTCCAATTCCAAGCCTCAAACCGTCAACAGCCCTCATTTTCACCTTACCACGCACAATGTTCACGAGCTTCTTGAGTGCCCTGTCTGTACTAGTTCTATGTACCCTCCAATTCATCAGTGCCACAATGGGCATACTCTTTGTTCAACCTGTAAAACAAGGGTGCACAATCGATGCCCGACATGTAGACAAGAGCTGGGCGACATAAGATGTTTAGCATTGGAAAAAGTAGCTGAATCGCTTGAATTGCCTTGCAAATACTGTTCGTTGGGATGCCTGGAGATATTTCCCTACTATAACAAGCTTAAACATGAATCTGTGTGTAGTTTTAGACCATACAATTGTCCTTATGCCGGTTCTGACTGTGCTGTTGTTGGAGATATTCCCTTCCTTGTTTCTCATCTCAGAGATGATCACAAGGTCGACATGCATTCTGGATGCACTTTCAACCACCGCTATGTCAAGTCCAATCCTCGAGAAGTAGAAAACGCAACATGGATGTTAACTGTGTTCCACTGCTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCATTCCAACTGGGGATGGCTCCTGCTTATGTGGCGTTTCTCCGATTCATGGGCAGCGAAGCAGAAGCCAGAAACTACAGCTATAGCCTGGAAGTTGGTGGAAGTGGAAGGAAACTAATTTGGGAGGGAAGCCCCAGAAGCATTAGGGACAGTCACGAGAAGGTTAGGGACAGCCACGATGGCCTGATTATTCAGCGTAATATTGCACTTTTCTTCTCCGGTGGGGAGAGGAAAGAGCTGAAGCTCCGAGTGACTGGCCGGATATGGAAAGAACAGCCCAACTCGGAGGGTGGACCCTGCATACCTATTCTATTTAGCTAA 951 46.69 MDFDRIESLPSSDAMDEGEIHQHRRQFSSNSKPQTVNSPHFHLTTHNVHELLECPVCTSSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCLEIFPYYNKLKHESVCSFRPYNCPYAGSDCAVVGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYVAFLRFMGSEAEARNYSYSLEVGGSGRKLIWEGSPRSIRDSHEKVRDSHDGLIIQRNIALFFSGGERKELKLRVTGRIWKEQPNSEGGPCIPILFS 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18693382 18696324 - BLOR07720 Blo16g00472 71663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00472 316 CDD RING-HC_SIAHs 52 90 - -
Blo16g00472 316 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Blo16g00472 316 SUPERFAMILY TRAF domain-like 107 299 - -
Blo16g00472 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Blo16g00472 316 CDD Sina 168 296 - -
Blo16g00472 316 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Blo16g00472 316 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Blo16g00472 316 SUPERFAMILY RING/U-box 39 93 - -
Blo16g00472 316 MobiDBLite consensus disorder prediction 1 26 - -
Blo16g00472 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 306 - -
Blo16g00472 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Blo16g00472 316 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Blo16g00472 316 MobiDBLite consensus disorder prediction 1 39 - -
Blo16g00472 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 295 IPR008974 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo02g00324 Blo16g00472 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00335 Blo-Chr7:4307006 Blo16g00472 Blo-Chr16:18693382 0 dispersed
Blo15g00087 Blo-Chr15:726299 Blo16g00472 Blo-Chr16:18693382 0 dispersed
Blo16g00472 Blo-Chr16:18693382 Blo02g00324 Blo-Chr2:3296730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00472 K04506 - rcu:8263515 567.77