Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00530 ATGGCTGCTGCTTCTGCATACGCCATCTTCATGCTCATTTTTGTGTACTCTGTTACAGGAGGAGGAGAAGATGGAGAAATTCCTCTAGGCCAGTCGCTGTCCACCATGGGGGACCTTTCATGGTCCTCTACTTCTGGGCATTTCGCATTTGGGTTCTACAAGCAAGACGATGGATTCTCGATCGGAACTTGGTTGGTGGGAAAAGAGAAGACGATAATGGTGTGGGCAGCAATTCGAGATTATCCATTAATCACCTCCAACGCCACTCTTAGTTTAACCAGTTTTGGCGTCCTTTTGGAAACTGAAAATGGAGAGAAGATTTGGGTTGCATTTACATCTGAAGCAGTTGCTTTTGCCTCCATGCTCAACAATGGAAGCTTTGTCCTCTTTTATAAAAACAAATCTATTGTATGGCAGAGTTTTGATTACCCAACTGATACCCTTTTAGGGGGCCAGTCTCTTGTCGCCGGAAGTTCTTTGTACTCCAATCTTTCGAAGGCCAACCACTCAACTGGACTATTTCATCTCGCTATGCAAACCGATGGAAATCTTGTCCTCTACCCTTCCCACACTCCAAAAACCTCAATAGACAGCTACTGGAGCTCCGATACTTACGGCAGCGTTTCAACTTATCTCCTTTTGAGCATATCGTCTGAGTTAGATCTTATTATTGGAGATTCCTCTCGATTGATTAGAAGACTCTACTACAACCCTTCTGAGCAAACTTCTGTTCATGTCGCTGGTGGATTTCCGATTTACAGAGCTACTCTCGATGTTGATGGGGTTTTCCGTTTGTACTCACATTCTCTAGATGAAAATGGTGAACTGACGACTGAAATTGTATGGCAGGCTTTGGAGAATGCTTGTGCGGTGAAGAGCTTTTGTGGGTTCAATAGCTATTGCACATTCGATGACCTCACACCCTACTGTCACTGTCTTCCCGGAACAGACAGCAATGATCAGCGGTCTGGCTGCAAAAAGAACTCGTTCGAACAAGGTTGCATCGGTGGGAAAGAAAATGGTGGGATTTATAACATTACTGTTTTTGATCACATGACGTGGGGCGATCGTCCTTATTTCCAGGGAAAAATGACGATCGAAGAATGTGAGGTTTCATGCATGGAGGACTGTAATTGCGGAGCGGCGCTGTTTGATGACAACAATTGCATGAAACAGAGCCTTCCTCTGAGATATATCAGTAGGAGAGACGGTGTAACTTCAAAAGCTCTTGTGAAGGTGGTTGTCAAACCCGTCGGAAATTCCAATTCATCTGATCAGATTGCTAAGCAACTGCCTGTTATAACAATTACCGAAGGAAAAACGGTGATTCTTGTTAGGACTTTAAGTTCCATCCTTCTGTCAGGCCTCTTTCTCACAATTGCTGGCATTTTCATATATAAGTATCGAGTTCTTAAGTACCAGAGATTGGTGGAGAGTGGAAATTCTGGGTTTGTGGAGGATCTCGAATTGAGATTGTTCTCGTACAATGATCTCAGAAAAGCGACAAATGGGTTCAAGGAAAAGTTGGGCAAAGGCTCATTTGGAGCAGTATATAAAGGGTCATTCCACAAGGGGAAGAAGGTGGTTGCAGTGAAAAGACTAGAGAAGGTGGTTGAAGATGGGGAGAGGGAGTTTAGGGCTGAGATGAGAACCATTGGGAGAGCCCATCATAAGAACCTAGTAAGCTTACTTGGCTACTGTATCGAAGACTCCAAAAGGCTTCTCGTCTATGAATATATGACAAACGGCTCCCTTGCCGATCTTCTCTTCCGATTGCATACTCCTCCCAATTGGAACGAACGAGTGCGAATCGTAGAAGAGGTTGCAAAGGGCTTATTGTATCTCCATGAAGAGTGTGAGACGCCAATCATCCATTGTGATATAAAACCTCAAAACATTTTGATGGACGATTTTTGGACTGCTAAAATATCAGATTTCGGGCTGGCAAAACTTTTAATGCCTGATCAAACGAGGACTTTAACAGGCCCTAGAGGAACCATAGGCTATTCTGCCCCGGAATGGCAGAAGAACATCCCCATATCTCTCAAAGTAGATGTTTATAGCTATGGAATTGTCCTCCTCGAAATTGTCTGCTGCCGTCGAAATTTCGAGGCGAACGTCTCCGACCCAGAGAAAATTATTCTCCCCTCATGGGTTTACAAGTGCTTTGTCAAGCGACAATTGAACAAAATTGTAAATGGTGAGGAAGTTGAGAAGAACGTTTTAGAGAAATTGGTTAAAGTTGCTATGTGGTGCGTTCAAGACCAGCCTGCTCTTCGTCCTTCAATGAAGAGTGTGGTTTTGATGCTTCAAGGGATCACCGACATAGCCATTCCTCCATGTCCGAGCAGCTCGTGA 2358 44.19 MAAASAYAIFMLIFVYSVTGGGEDGEIPLGQSLSTMGDLSWSSTSGHFAFGFYKQDDGFSIGTWLVGKEKTIMVWAAIRDYPLITSNATLSLTSFGVLLETENGEKIWVAFTSEAVAFASMLNNGSFVLFYKNKSIVWQSFDYPTDTLLGGQSLVAGSSLYSNLSKANHSTGLFHLAMQTDGNLVLYPSHTPKTSIDSYWSSDTYGSVSTYLLLSISSELDLIIGDSSRLIRRLYYNPSEQTSVHVAGGFPIYRATLDVDGVFRLYSHSLDENGELTTEIVWQALENACAVKSFCGFNSYCTFDDLTPYCHCLPGTDSNDQRSGCKKNSFEQGCIGGKENGGIYNITVFDHMTWGDRPYFQGKMTIEECEVSCMEDCNCGAALFDDNNCMKQSLPLRYISRRDGVTSKALVKVVVKPVGNSNSSDQIAKQLPVITITEGKTVILVRTLSSILLSGLFLTIAGIFIYKYRVLKYQRLVESGNSGFVEDLELRLFSYNDLRKATNGFKEKLGKGSFGAVYKGSFHKGKKVVAVKRLEKVVEDGEREFRAEMRTIGRAHHKNLVSLLGYCIEDSKRLLVYEYMTNGSLADLLFRLHTPPNWNERVRIVEEVAKGLLYLHEECETPIIHCDIKPQNILMDDFWTAKISDFGLAKLLMPDQTRTLTGPRGTIGYSAPEWQKNIPISLKVDVYSYGIVLLEIVCCRRNFEANVSDPEKIILPSWVYKCFVKRQLNKIVNGEEVEKNVLEKLVKVAMWCVQDQPALRPSMKSVVLMLQGITDIAIPPCPSSS 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21840838 21843195 + BLOR07778 Blo16g00530 71721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00530 785 CDD STKc_IRAK 509 773 - -
Blo16g00530 785 Pfam D-mannose binding lectin 73 155 IPR001480 -
Blo16g00530 785 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 205 IPR036426 -
Blo16g00530 785 SUPERFAMILY Protein kinase-like (PK-like) 487 770 IPR011009 -
Blo16g00530 785 SMART blect_4 145 288 IPR001480 -
Blo16g00530 785 SMART blect_4 32 144 IPR001480 -
Blo16g00530 785 Gene3D Phosphorylase Kinase; domain 1 471 579 - -
Blo16g00530 785 PIRSF SRK 1 785 IPR024171 GO:0004674
Blo16g00530 785 Pfam Protein kinase domain 506 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00530 785 ProSiteProfiles Bulb-type lectin domain profile. 24 142 IPR001480 -
Blo16g00530 785 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 784 IPR045874 GO:0004672
Blo16g00530 785 ProSitePatterns Protein kinases ATP-binding region signature. 509 532 IPR017441 GO:0005524
Blo16g00530 785 ProSiteProfiles Protein kinase domain profile. 503 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00530 785 Gene3D Transferase(Phosphotransferase) domain 1 580 777 - -
Blo16g00530 785 SMART serkin_6 503 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00530 785 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 20 784 - -
Blo16g00530 785 Gene3D - 26 146 - -
Blo16g00530 785 Gene3D - 147 292 - -
Blo16g00530 785 ProSiteProfiles Bulb-type lectin domain profile. 145 278 IPR001480 -
Blo16g00530 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00530 - - - mesc:122721379 871.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00961 Blo-Chr4:11779256 Blo16g00530 Blo-Chr16:21840838 2.84E-172 dispersed
Blo07g00374 Blo-Chr7:6169546 Blo16g00530 Blo-Chr16:21840838 1.99E-180 dispersed
Blo16g00527 Blo-Chr16:21743462 Blo16g00530 Blo-Chr16:21840838 0 proximal
Blo16g00530 Blo-Chr16:21840838 Blo16g00531 Blo-Chr16:21874332 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1261 . Blo16g00530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015899 2 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84750 PF00069 Pkinase 2.00E-49 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00530 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.429111 1.361584 1.034045 0.0 0.0 0.0