Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00585 ATGGCTGGAATTAAGTTATCTATGTTGAAGAGGCCACTGTGTGATTGGAAGCCACATTCCTTTCAATGTTTCGACTATATTGAATGTGGAAATTATGCCCATCGTCTTCCTGTAACAGTCAGATCATCGTTTGCTCTTCTAAATCACAAGTTTCACTCAACTCTGAAATCTGAAAATATTGCCAATACCCATTCCGGAACAGCATGTATAGAACCTCTGGCTGCCAAAAACTATTATAAAACCAAACCCTTGACTGCATTTTCACTTATGTCTTCAAATTCACAATTACGAAATACTGTTCCTCTTTCTATGTCAAACCCTCTATATAATTATCGATCATATTCATCATCATCTGGTAATAAAGTGGGCGACTACAGAGATGTGGGAGTTAAGGCAGCATCTGGGACTGATGAAGGGGATGTTAATACCACAAGCATTCTTGGAGGTGATTGGCATGAAAAAGTTAAGGATGCTTATCAAAGTGCTGTAGAGGCTGTATCATTTTCTGGGCAGAGGGCAAAAGAAGTATCTGATGAATGGACACCTTATGTTGATCAATTGCTAGACACACATCCATATCTCAAAAATGTGATTGTTCCGGTGAGTTGTACATTGACTGCCTCTGTTTTGGCATGGGTGGTGATGCCTAAGGTGTTGAGAAGATTTCACAAGTATGCATCATCAGGTCCGGCTGCTCTTCTCTCTGGCAGTCTCTTAGGAGAACCAATTCCTTACGAGAAGACCTTTTGGGGTGCGTTGGAGGACCCCGTTCGATACCTTACGACCTTCATTGCATTTACACAAATTGGCATGATTGTAGCACCAACAACTATAGCCTCGGAATATGTTATACAGGCCAGCAGGGGAGCAGTTATTGTATCCTTGGTTTGGTTTTTGTATCGATGGAAAACAAACGTGCTAACCCGTGCATTGACTGCCAAGAATATGGCAGGGTTTGCTCGGGATAGGGATAAGTTACTGGCTCTGGATAAAATTTCATCTGTTGGACTATTTGTACTTGGGTTAATGGCTTTCGCTGAAGCTTGTGGTGTGGCTGTTCAGTCTATTCTTACTGTTGGTGGTATTGGAGGAGTCGCTACTGCTTTCGCTGCAAAGGACGTCCTTGGAAATGTCCTTAGTGGTTTAGCCATGCAATTTTCCAAGCCCTTCTCAATTGGAGACACAATAAAGGCTGGATCGATAGAAGGTCAGGTGGTTGAGATGGGACTAACGACGACATCATTGCTTAGTGCTGAGAAATTTCCCGTTATAGTTCCAAATTCGCTGTTCTCTAGCCAGAAAATGATCCATCTAACTAACATAAAATCTCACAAAAAAATGTTGCTTAGATTGTTTTTGTCATTTGAGGTTGGAAGCTTCTTTTTTAGCTCATCACTGATGGTTATAACGAACAAGTCACGAGCTCAATGGCGTGCGATGACCACTAAAATCCCTCTGCAAGTTGATGATTTCAGTAAGATTGCTCAAATAGGAGAAGACATCAAGAGTATGCTAAGATCAAACCCAAATGTGTTTTTGGAGAAGGAAGCTCCTTATTGCTTTCTCTCCCGCATTGAAAGTTCATTTTCCGAGCTAACTCTAGGCTACAACCTCAAACATATGAAAAAAGACGAACTATACTCGGCGGAACAAGAGATTCTCCTCCAATCCGTGCAAATCATCAAAGAACATGGCGTTGCATTGGGCAGCACAGCCGCGAGTTAA 1725 41.86 MAGIKLSMLKRPLCDWKPHSFQCFDYIECGNYAHRLPVTVRSSFALLNHKFHSTLKSENIANTHSGTACIEPLAAKNYYKTKPLTAFSLMSSNSQLRNTVPLSMSNPLYNYRSYSSSSGNKVGDYRDVGVKAASGTDEGDVNTTSILGGDWHEKVKDAYQSAVEAVSFSGQRAKEVSDEWTPYVDQLLDTHPYLKNVIVPVSCTLTASVLAWVVMPKVLRRFHKYASSGPAALLSGSLLGEPIPYEKTFWGALEDPVRYLTTFIAFTQIGMIVAPTTIASEYVIQASRGAVIVSLVWFLYRWKTNVLTRALTAKNMAGFARDRDKLLALDKISSVGLFVLGLMAFAEACGVAVQSILTVGGIGGVATAFAAKDVLGNVLSGLAMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQKMIHLTNIKSHKKMLLRLFLSFEVGSFFFSSSLMVITNKSRAQWRAMTTKIPLQVDDFSKIAQIGEDIKSMLRSNPNVFLEKEAPYCFLSRIESSFSELTLGYNLKHMKKDELYSAEQEILLQSVQIIKEHGVALGSTAAS 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 24086860 24090224 + BLOR07833 Blo16g00585 71776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00585 574 Pfam Mechanosensitive ion channel 331 440 IPR006685 GO:0016020|GO:0055085
Blo16g00585 574 Gene3D - 389 437 IPR023408 -
Blo16g00585 574 SUPERFAMILY Sm-like ribonucleoproteins 373 437 IPR010920 -
Blo16g00585 574 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 98 572 - -
Blo16g00585 574 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 289 372 IPR011014 GO:0016020
Blo16g00585 574 Gene3D - 282 388 - -
Blo16g00585 574 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 98 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00585 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - vvi:100261915 621.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00332 Blo16g00585 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00585 Blo-Chr16:24086860 Blo18g00106 Blo-Chr18:991140 8.64E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g752 . . . . Bpe14g00990 . . . . . Cma06g01048 Cma14g02097 Car06g00865 . . Cpe08g00583 Cpe03g01782 Bhi01g00455 . . . . . . Cla05g00108 . . . . . . . . Cone11ag0481 Cone18ag1026 Lsi05g02106 . . Cme06g00112 Blo02g00332 Blo16g00585 . . Bpe13g00978 . Bma02g01084 Bma06g01163 . Cmo06g01051 Cmo14g02161 . . . . . . . . . . . . . . . . . . . . . Csa03g00822 Chy06g00113 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00585 BCT 1 571 Mechanosensitive Ion Channel Family AT4G00290 52.4 4.1e-147 518.5
Blo17g00099 . 686 1270 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-181 632.5
Blo18g00106 . 9 646 Mechanosensitive Ion Channel Family AT5G10490 53.6 2.2e-180 629.4
Blo05g00739 . 210 695 Mechanosensitive Ion Channel Family AT5G10490 62.2 4.1e-150 528.9
Blo18g00106 . 9 653 Mechanosensitive Ion Channel Family AT1G58200 55.1 1.3e-185 646.7
Blo17g00099 . 669 1266 Mechanosensitive Ion Channel Family AT1G58200 58.8 1.1e-184 643.7
Blo05g00739 . 210 666 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.4e-134 476.5
Blo15g00394 . 611 1471 Mechanosensitive Ion Channel Family AT1G53470 52.7 1.1e-240 830.1
Blo15g00394 . 611 1473 Mechanosensitive Ion Channel Family AT3G14810 52.2 2.4e-232 802.4
Blo15g00394 . 611 1472 Mechanosensitive Ion Channel Family AT1G78610 58.1 5.0e-270 927.5
Blo15g00394 . 769 1468 Mechanosensitive Ion Channel Family AT2G17000 58.2 4.7e-220 761.5
Blo04g00586 . 217 602 Mechanosensitive Ion Channel Family AT2G17000 55.0 1.8e-110 397.5
Blo12g01027 BCT 16 781 Mechanosensitive Ion Channel Family AT5G19520 50.8 2.1e-195 679.5
Blo12g01027 BCT 71 781 Mechanosensitive Ion Channel Family AT5G12080 56.9 2.6e-214 742.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00585 Blo_Chr16 FPKM 26.377451 21.812725 23.401411 25.047258 24.779507 28.023785 21.103218 22.93578 17.11253 20.740561