Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00682 ATGGGTAAGGAAAAGGTTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGAAAATCAACCACTACTGGCCATCTCATCTACAAGCTAGGAGGCATTGACAAGAGAGTCATAGAGAGGTTCGAGAAGGAAGCAGCTGAAATGAACAAGAGATCCTTTAAGTACGCTTGGGTGCTTGACAAGCTTAAGGCTGAGCGGGAGCGTGGAATCACCATTGACATTGCTCTGTGGAAGTTTGAAACTACAAAGTACTACTGTACGGTCATCGATGCTCCTGGTCATCGTGATTTTATTAAGAATATGATTACTGGAACATCCCAAGCGGATTGTGCTGTGCTTATTATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGCCAGACCCGAGAGCATGCTCTCCTTGCTTTCACACTTGGTGTTAGGCAAATGATTTGTTGCTGCAATAAGATGGATGCCACTACTCCCAAATATTCCAAGGGAAGATATGATGAAATTGTCAAAGAAGTCTCCTCTTACCTGAAAAAGGTTGGGTACAACCCTGAAAAAATTCCTTTCGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATCGAAAGGTCGACAAACCTTGACTGGTACAAGGGCCCCACTCTCCTGGAAGCTCTTGACATGATCCATGAGCCCAAGAGGCCTTCAGACAAGCCCCTTCGACTTCCACTTCAGGACGTCTACAAGATTGGTGGCATTGGCACTGTCCCAGTCGGCCGAGTCGAAACGGGTGTTATAAAACCTGGAATGGTGGTCACCTTCGGACCCACCGGACTGACCACTGAAGTCAAGTCTGTCGAAATGCACCATGAGTCTCTTCAGGAAGGTCTCCCCGGCGACAATGTTGGATTCAACGTGAAGAATGTGGCTGTAAAAGATCTTAAACGAGGATTTGTCGCATCCAACTCCAAGGACGACCCGGCCAAGGAGGCTGCCAACTTCACATCACAAGTTATTATCATGAACCACCCTGGCCAGATTGGAAATGGCTATGCCCCGGTTCTTGATTGCCACACCTCCCACATCGCTGTTAAGTTTGCAGAGATTCTTACGAAAATTGACAGACGGTCTGGTAAGGAGCTGGAGAAGGAGCCAAAGTTTTTGAAGAATGGTGATGCTGGAATGGTGAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCCGACTATCCACCCCTTGGTCGTTTTGCTGTCAGGGACATGCGGCAGACTGTGGCCGTCGGTGTCATAAAGAGTGTAGAGAAGAAGGATGCAAGCGGAGCTAAAGTCACAAAATCTGCTGCAAAGAAAGGAGGAAAG 1347 47.59 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDMIHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEGLPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDASGAKVTKSAAKKGGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 26437721 26439683 + BLOR07930 Blo16g00682 71873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00682 449 Gene3D - 1 228 IPR027417 -
Blo16g00682 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Blo16g00682 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Blo16g00682 449 Gene3D Translation factors 323 430 - -
Blo16g00682 449 Gene3D Translation factors 229 316 - -
Blo16g00682 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Blo16g00682 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Blo16g00682 449 CDD EF1_alpha_II 230 320 - -
Blo16g00682 449 PANTHER TRANSLATION FACTOR 1 447 - -
Blo16g00682 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Blo16g00682 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Blo16g00682 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Blo16g00682 449 CDD EF1_alpha_III 323 426 - -
Blo16g00682 449 CDD EF1_alpha 9 227 - -
Blo16g00682 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Blo16g00682 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Blo16g00682 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Blo16g00682 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Blo16g00682 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Blo16g00682 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Blo16g00682 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Blo16g00682 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Blo16g00682 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00916 Blo-Chr13:31678548 Blo16g00682 Blo-Chr16:26437721 0 dispersed
Blo13g01110 Blo-Chr13:33230143 Blo16g00682 Blo-Chr16:26437721 0 dispersed
Blo14g00160 Blo-Chr14:1220991 Blo16g00682 Blo-Chr16:26437721 0 dispersed
Blo14g00161 Blo-Chr14:1223660 Blo16g00682 Blo-Chr16:26437721 0 dispersed
Blo16g00126 Blo-Chr16:2862452 Blo16g00682 Blo-Chr16:26437721 1.62E-17 dispersed
Blo16g00682 Blo-Chr16:26437721 Blo01g01345 Blo-Chr1:51097906 4.88E-71 dispersed
Blo01g00332 Blo-Chr1:4004052 Blo16g00682 Blo-Chr16:26437721 0 wgd
Blo12g00113 Blo-Chr12:8034008 Blo16g00682 Blo-Chr16:26437721 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00682 K03231 - mesc:110601548 885.174