Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00685 ATGCTTTCTGGGTTTTCTCAGGAAAGTTCGAGAATGTATTCGGCTCTCCACTCTCTCCCGCTCGACGTCAAGATTCAGGGACCTTTGCAAGGAACCAACTTGCCCGGCGACGCTTGTTTGGTTCTCTCTTCTGATCCTAAGCCCCGCCTCCGGTGGACGGCGGAGCTCCATGAGAGATTCGTCGACGCTGTAACTCAACTCGGTGGCCCTGAAAAAGCAACACCTAAGACTATTATGAGAACAATGGGAGTAAAAGGCTTAACCCTTTATCACTTGAAATCGCACCTCCAGAAATACCGGTTGGGGAAGCAATCGAGCAAGGAATTTACAGACAATATGAAGGATGGGTCTAGCATTTCGCAAAATCCGGACTCTACTTCCTCGCCTCTAACATCGCCGAGAATGATACCACAAGACATGAATGACTGTTATCAAGTAACCGAGGCTTTGCGCGATCAAATGGAAGTTCAAAGGAGACTACACGAGAAGCTGGAGGTGCAGCGCCGGCTTCAAATTCGAATCGAAGCACATGGAAAATACCTGCAAACGATCCTCGAGAAAGCATGTCAAGCTGTGAGTGATCAAGCTGCTGCCTCAGCCGGGCTGGAATCTGCAAGAGAAGAGCTGTCTGAGCTGGCAATTAAGGTATCGACCGATTATCGAGGAATGGGTTCGAATGATACCCTCAAAATGCCGTCTTTGTCAGAACTCTCGGCAGCTCTCGAAAATCGAAATGCTCCCCGCAATGTTCCTTCTCGTATGGGCGATTGCTCGGGGGAGAGCTGCTTGACATCGGCTGGAAGCCCTGTTTCTTCAATGGGAATCGGCTCAACCACTGCAGTAATGGAGAAGAGACCGAAATCATTGTTCGGAATCAGGGATTCGTTGCCTTTGGACCCGAACATTCAACACGAGATCGAATGGATGATGACAAACATTGGATGA 945 49.21 MLSGFSQESSRMYSALHSLPLDVKIQGPLQGTNLPGDACLVLSSDPKPRLRWTAELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSSKEFTDNMKDGSSISQNPDSTSSPLTSPRMIPQDMNDCYQVTEALRDQMEVQRRLHEKLEVQRRLQIRIEAHGKYLQTILEKACQAVSDQAAASAGLESAREELSELAIKVSTDYRGMGSNDTLKMPSLSELSAALENRNAPRNVPSRMGDCSGESCLTSAGSPVSSMGIGSTTAVMEKRPKSLFGIRDSLPLDPNIQHEIEWMMTNIG 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 26475340 26478344 - BLOR07933 Blo16g00685 71876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00685 314 Gene3D - 46 104 - -
Blo16g00685 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Blo16g00685 314 Pfam MYB-CC type transfactor, LHEQLE motif 145 190 IPR025756 -
Blo16g00685 314 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Blo16g00685 314 PANTHER PROTEIN PHR1-LIKE 2 12 311 - -
Blo16g00685 314 Pfam Myb-like DNA-binding domain 50 100 IPR001005 -
Blo16g00685 314 MobiDBLite consensus disorder prediction 111 135 - -
Blo16g00685 314 MobiDBLite consensus disorder prediction 103 136 - -
Blo16g00685 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Blo16g00685 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 311 IPR044848 GO:0003700
Blo16g00685 314 Coils Coil 147 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00685 - - - vvi:100250267 421.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00455 Blo-Chr4:3788347 Blo16g00685 Blo-Chr16:26475340 9.41E-71 dispersed
Blo07g01419 Blo-Chr7:34184185 Blo16g00685 Blo-Chr16:26475340 1.26E-64 dispersed
Blo09g00329 Blo-Chr9:13637275 Blo16g00685 Blo-Chr16:26475340 2.53E-62 dispersed
Blo13g00605 Blo-Chr13:28469327 Blo16g00685 Blo-Chr16:26475340 1.86E-66 dispersed
Blo14g00044 Blo-Chr14:272266 Blo16g00685 Blo-Chr16:26475340 1.27E-62 dispersed
Blo16g00685 Blo-Chr16:26475340 Blo02g00231 Blo-Chr2:2205649 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13422 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Blo TF