Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00711 ATGGCAACCAGATACTGGGTGGTCTCTCTCCCGGTTCAAAGTTCAGCATCCACCGTGTGGAGCCATCTGCAAGAACAAATCTCCAAGCATTCCTTCGACACTTCTCTTTATAAATTCAATATCCCTAATCTCCGCGTTGGAACTCTGGATTCGCTCCTTTCACTAAGCGACGATCTCTTAAAGTCGAATAGCTTTGTGGAAGGGGTGTCTCACAAGATAAGGCGTCAGATTGATGAATTGGAAAGAGCATCGAGCTTGGAGAGCACGGGTATGACGGTAGACGGCGTACCAGTAGAATCATATCTCACTAGGTTCATATGGGATGAAGCCAAGTACCCGACGATGTCACCTTTGCGGGAAACTGTGGATAGCATTCATGGTTTGGTAGCAAAGATTGAGGATGATCTTAAGGTTCGTGTTTCTGAGTACAGTAATGTGCGCAGTCAGTTGAATGCCATCAATCGAAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCCAACCTTGTGAAACCAGAGGATATAATAACATCAGAGCATCTTGTAACACTACTTGCAATTGTTCAGAAGTATTCACAGAAGGAATGGCTGTCTAGCTATGAAACATTGACAAGCTATGTGGTCCCAAGGTCTTCGAAGAAGTTATATGAAGATAATGAGTATGCCCTTTATACTGTGACACTATTTGGCCGTGTTGCCGATAATTTTAGAACAAGCGCACGGGAGAGAAACTTTCAGATTCGTGATTTTGAATATAGTCCAGAAGCACAAGATAGCAGGAAGCAGGAGCTACAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGTTATGCCAGTTATGGTGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTACGTGTTTTTGCTGAGAGCATTCTTAGATATGGTTTGCCGCCGTCTTTCTTGGCTTGTGTTTTAGCTCCATCTGTGAAAAGTGAGAAAAAGGTGAGATCAATTCTCGAAGGGTTCACGTATTGGAAAACAGAAGATGATGTGGGAGGGGGGATGGTTGGTCTGGCAGGGGATGCCGATGCCCATCCTTACGTCTCCTTTACAGTAAATCTTGTT 1110 44.5 MATRYWVVSLPVQSSASTVWSHLQEQISKHSFDTSLYKFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSHKIRRQIDELERASSLESTGMTVDGVPVESYLTRFIWDEAKYPTMSPLRETVDSIHGLVAKIEDDLKVRVSEYSNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAIVQKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFGRVADNFRTSARERNFQIRDFEYSPEAQDSRKQELQKLVQDQESLRSSLLQWCYASYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGFTYWKTEDDVGGGMVGLAGDADAHPYVSFTVNLV 370
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 27263887 27270075 - BLOR21498 Blo16g00711 71902

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00711 370 Gene3D - 41 312 - -
Blo16g00711 370 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 369 - -
Blo16g00711 370 Gene3D Vacuolar atp synthase subunit c; domain 1 5 338 - -
Blo16g00711 370 CDD V-ATPase_C 5 367 IPR004907 GO:0033180|GO:0046961|GO:1902600
Blo16g00711 370 Pfam V-ATPase subunit C 5 336 IPR004907 GO:0033180|GO:0046961|GO:1902600
Blo16g00711 370 Gene3D - 163 251 - -
Blo16g00711 370 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Blo16g00711 370 SUPERFAMILY Vacuolar ATP synthase subunit C 1 369 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00711 K02148 ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C - qsu:112025646 645.58
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00892 . 9 451 Primary Pumps ATPases(2) AT1G10130 79.5 2.5e-196 682.9
Blo17g00891 . 71 403 Primary Pumps ATPases(2) AT1G10130 79.9 7.3e-156 548.5
Blo17g00890 . 87 219 Primary Pumps ATPases(2) AT1G10130 88.0 9.2e-58 222.6
Blo13g01100 BCT 387 1129 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1175.2
Blo14g00151 BCT 379 1151 Primary Pumps ATPases(2) AT2G28520 74.6 0.0e+00 1170.6
Blo13g00540 BCT 104 868 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-280 961.8
Blo17g00765 . 2 774 Primary Pumps ATPases(2) AT2G28520 55.6 5.0e-251 864.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G28520 54.7 2.8e-121 433.3
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT2G21410 77.0 0.0e+00 1179.9
Blo17g00765 . 3 774 Primary Pumps ATPases(2) AT2G21410 63.2 8.7e-288 986.5
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT2G21410 59.4 3.9e-264 907.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT2G21410 57.7 2.5e-263 905.2
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G21410 74.4 4.6e-164 575.5
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT4G39080 77.5 0.0e+00 1185.6
Blo17g00765 . 3 771 Primary Pumps ATPases(2) AT4G39080 64.1 6.7e-288 986.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT4G39080 58.2 6.3e-262 900.6
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT4G39080 60.0 1.4e-261 899.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT4G39080 76.9 9.6e-170 594.3
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.3e-61 230.3
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 96.4 1.5e-57 219.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G34720 89.1 2.6e-54 208.4
Blo15g00664 . 143 245 Primary Pumps ATPases(2) AT4G34720 94.4 2.8e-40 161.8
Blo02g00650 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.4e-67 250.8
Blo18g00785 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.9e-63 239.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT1G75630 80.1 1.7e-51 199.5
Blo02g00650 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Blo18g00785 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 6.0e-71 263.8
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT2G16510 89.1 8.7e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT2G16510 94.3 3.5e-39 158.3
Blo02g00650 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Blo18g00785 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-52 202.2
Blo17g00753 BCT 1 95 Primary Pumps ATPases(2) AT1G19910 100.0 1.3e-38 156.0
Blo15g00664 . 144 238 Primary Pumps ATPases(2) AT1G19910 98.9 5.0e-38 154.1
Blo12g01087 BCT 5 175 Primary Pumps ATPases(2) AT2G25610 88.9 1.6e-69 259.6
Blo01g01371 BCT 10 198 Primary Pumps ATPases(2) AT2G25610 75.7 4.7e-66 248.1
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 96.4 4.1e-57 217.6
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G38920 89.1 7.3e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT4G38920 94.3 3.0e-39 158.3
Blo01g01371 BCT 1 198 Primary Pumps ATPases(2) AT4G32530 77.1 1.7e-78 289.3
Blo12g01087 BCT 2 175 Primary Pumps ATPases(2) AT4G32530 69.6 1.3e-65 246.5
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1685.2
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07810 79.8 0.0e+00 1668.7
Blo17g00892 . 44 451 Primary Pumps ATPases(2) AT1G07810 50.3 1.0e-110 398.7
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07670 79.7 0.0e+00 1680.6
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07670 79.5 0.0e+00 1669.1
Blo17g00892 . 9 451 Primary Pumps ATPases(2) AT1G10130 79.5 2.5e-196 682.9
Blo17g00891 . 71 403 Primary Pumps ATPases(2) AT1G10130 79.9 7.3e-156 548.5
Blo17g00890 . 87 219 Primary Pumps ATPases(2) AT1G10130 88.0 9.2e-58 222.6
Blo13g01094 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1322.8
Blo14g00140 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.2 0.0e+00 1308.5
Blo17g00892 . 66 451 Primary Pumps ATPases(2) AT4G00900 51.1 5.4e-109 392.9
Blo03g01102 . 659 784 Primary Pumps ATPases(2) AT4G02620 81.7 6.1e-55 210.3
Blo06g00430 . 1 126 Primary Pumps ATPases(2) AT4G02620 80.2 8.0e-55 209.9
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G76030 96.4 2.2e-262 901.4
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G76030 96.2 3.7e-262 900.6
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G76030 64.0 4.0e-38 156.4
Blo07g01401 . 1 110 Primary Pumps ATPases(2) AT3G01390 80.0 2.4e-39 158.3
Blo16g00711 . 1 369 Primary Pumps ATPases(2) AT1G12840 79.2 2.0e-170 595.5
Blo04g01241 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 3.0e-117 418.3
Blo13g00310 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 7.4e-116 413.7
Blo07g01085 . 5 433 Primary Pumps ATPases(2) AT3G42050 70.3 6.5e-173 604.0
Blo02g00650 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Blo18g00785 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 6.0e-71 263.8
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT2G16510 89.1 8.7e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT2G16510 94.3 3.5e-39 158.3
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT4G38510 97.7 4.3e-266 913.7
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT4G38510 97.4 5.6e-266 913.3
Blo17g00662 . 423 544 Primary Pumps ATPases(2) AT4G38510 67.2 2.6e-37 153.7
Blo02g01135 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.7 8.5e-69 256.9
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G20260 96.0 1.1e-261 899.0
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G20260 96.0 1.8e-261 898.3
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G20260 63.2 8.8e-38 155.2
Blo13g01100 BCT 387 1129 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1175.2
Blo14g00151 BCT 379 1151 Primary Pumps ATPases(2) AT2G28520 74.6 0.0e+00 1170.6
Blo13g00540 BCT 104 868 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-280 961.8
Blo17g00765 . 2 774 Primary Pumps ATPases(2) AT2G28520 55.6 5.0e-251 864.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G28520 54.7 2.8e-121 433.3
Blo11g00688 . 43 350 Primary Pumps ATPases(2) AT3G28715 91.2 2.7e-166 581.6
Blo02g01135 BCT 1 207 Primary Pumps ATPases(2) AT4G11150 79.7 4.1e-86 314.7
Blo06g00777 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1171.4
Blo05g00009 . 1 643 Primary Pumps ATPases(2) AT1G78900 90.8 0.0e+00 1164.4
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G76030 96.4 2.2e-262 901.4
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G76030 96.2 3.7e-262 900.6
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G76030 64.0 4.0e-38 156.4
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT4G38510 97.7 4.3e-266 913.7
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT4G38510 97.4 5.6e-266 913.3
Blo17g00662 . 423 544 Primary Pumps ATPases(2) AT4G38510 67.2 2.6e-37 153.7
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G20260 96.0 1.1e-261 899.0
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G20260 96.0 1.8e-261 898.3
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G20260 63.2 8.8e-38 155.2
Blo16g00711 . 1 369 Primary Pumps ATPases(2) AT1G12840 79.2 2.0e-170 595.5
Blo04g01241 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 3.0e-117 418.3
Blo13g00310 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 7.4e-116 413.7
Blo02g01135 BCT 1 207 Primary Pumps ATPases(2) AT4G11150 79.7 4.1e-86 314.7
Blo02g01135 BCT 1 207 Primary Pumps ATPases(2) AT3G08560 67.9 3.5e-72 268.5
Blo02g01135 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.7 8.5e-69 256.9
Blo03g01102 . 659 784 Primary Pumps ATPases(2) AT4G02620 81.7 6.1e-55 210.3
Blo06g00430 . 1 126 Primary Pumps ATPases(2) AT4G02620 80.2 8.0e-55 209.9
Blo07g01401 . 1 110 Primary Pumps ATPases(2) AT3G01390 80.0 2.4e-39 158.3
Blo07g01085 . 5 433 Primary Pumps ATPases(2) AT3G42050 70.3 6.5e-173 604.0
Blo13g01100 BCT 387 1129 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1175.2
Blo14g00151 BCT 379 1151 Primary Pumps ATPases(2) AT2G28520 74.6 0.0e+00 1170.6
Blo13g00540 BCT 104 868 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-280 961.8
Blo17g00765 . 2 774 Primary Pumps ATPases(2) AT2G28520 55.6 5.0e-251 864.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G28520 54.7 2.8e-121 433.3
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT2G21410 77.0 0.0e+00 1179.9
Blo17g00765 . 3 774 Primary Pumps ATPases(2) AT2G21410 63.2 8.7e-288 986.5
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT2G21410 59.4 3.9e-264 907.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT2G21410 57.7 2.5e-263 905.2
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G21410 74.4 4.6e-164 575.5
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT4G39080 77.5 0.0e+00 1185.6
Blo17g00765 . 3 771 Primary Pumps ATPases(2) AT4G39080 64.1 6.7e-288 986.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT4G39080 58.2 6.3e-262 900.6
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT4G39080 60.0 1.4e-261 899.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT4G39080 76.9 9.6e-170 594.3
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.3e-61 230.3
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 96.4 1.5e-57 219.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G34720 89.1 2.6e-54 208.4
Blo15g00664 . 143 245 Primary Pumps ATPases(2) AT4G34720 94.4 2.8e-40 161.8
Blo02g00650 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Blo18g00785 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-52 202.2
Blo17g00753 BCT 1 95 Primary Pumps ATPases(2) AT1G19910 100.0 1.3e-38 156.0
Blo15g00664 . 144 238 Primary Pumps ATPases(2) AT1G19910 98.9 5.0e-38 154.1
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 96.4 4.1e-57 217.6
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G38920 89.1 7.3e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT4G38920 94.3 3.0e-39 158.3
Blo02g00650 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.4e-67 250.8
Blo18g00785 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.9e-63 239.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT1G75630 80.1 1.7e-51 199.5
Blo02g00650 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Blo18g00785 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 6.0e-71 263.8
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT2G16510 89.1 8.7e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT2G16510 94.3 3.5e-39 158.3
Blo01g01371 BCT 1 198 Primary Pumps ATPases(2) AT4G32530 77.1 1.7e-78 289.3
Blo12g01087 BCT 2 175 Primary Pumps ATPases(2) AT4G32530 69.6 1.3e-65 246.5
Blo12g01087 BCT 5 175 Primary Pumps ATPases(2) AT2G25610 88.9 1.6e-69 259.6
Blo01g01371 BCT 10 198 Primary Pumps ATPases(2) AT2G25610 75.7 4.7e-66 248.1
Blo11g00688 . 43 350 Primary Pumps ATPases(2) AT3G28710 93.8 2.3e-173 605.1
Blo11g00688 . 43 350 Primary Pumps ATPases(2) AT3G28715 91.2 2.7e-166 581.6
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1685.2
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07810 79.8 0.0e+00 1668.7
Blo17g00892 . 44 451 Primary Pumps ATPases(2) AT1G07810 50.3 1.0e-110 398.7
Blo13g01094 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1322.8
Blo14g00140 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.2 0.0e+00 1308.5
Blo17g00892 . 66 451 Primary Pumps ATPases(2) AT4G00900 51.1 5.4e-109 392.9
Blo17g00892 . 9 451 Primary Pumps ATPases(2) AT1G10130 79.5 2.5e-196 682.9
Blo17g00891 . 71 403 Primary Pumps ATPases(2) AT1G10130 79.9 7.3e-156 548.5
Blo17g00890 . 87 219 Primary Pumps ATPases(2) AT1G10130 88.0 9.2e-58 222.6
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07670 79.7 0.0e+00 1680.6
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07670 79.5 0.0e+00 1669.1
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00711 Blo_Chr16 FPKM 22.574772 22.284836 5.620978 6.875136 41.538227 48.227119 48.879822 2.044541 3.196683 3.311681