Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00722 ATGACCTCCGCGGCAATGGCAGCCTACGACCTCACCCCACGTATGGCTCCCAGTCTTGATTGTCACCTCCTGTTTCCTCTGCTCGATTTTCTTCAGGAACGGCAGGTTCACCCTGATGAGCAGATACTCCTGTTTAAGATGGAGCTTCTGATGAAGACTCACATGGTCGACTGCGCCTGGAGTGTCCACAATTATCTTTTCAACTCCAAAGAAGTGCCTCAGAATATGGTGGAGAAAAAAGCCCAGGTGAATGTGAGGCTCAGGGAATTGGAAGGGTGGGCGGCGCCTATGGTTTTTCTTCTTCAGAATGCCTATGCGCTTCAGTGTTTGACGGCTGATAAGGATTATAATCTTCAAATGCTTCATAATCGTTATAAGATCGGGTCAGAGCAGATACAAGCACTGTATGAATATGCCAAGTTTCTGTTTGAGTCTGGAAAATACGCTGTAGTTGCAAAGTATTTTGGTCTGTACATTCCTTTATCCACAAACACAGAATTGCGTTTTAGTGCAATGTGGGGAAAGCTGGCTGCAGAGATATTGCTGAAGAATTGGAATGCCGCTCTGCTAGACCTTTATCGATTAAAAGATATCATTGACTTGGAGATATTTGAATCACCTATGAATCTAGTGGAAATCAGATTATGGCTATTGCACTGGAGTCTGTTCATCTTTTTTAATCACGACAATGGTAGAGCACTTATTATTGACTTATTTAATCAAGACAATGCTCTGGCTATGAGATTGATCTCGACTCATGAAGGTGCTGAGAGATGCACAACAATCCAAGACTCAAGGCTGGATGTTGGGATTGATGCCGTCATGGAACCCAACCATTCAAATGTGTCTATAAATGCTCAATCAACAATAACCAATGATTTTCGAAATGATGGAGAAGGCCAAACTTTTTTTGAAATTTCAGAAAATCTTCGGGAATCTGGACGTCAAGTTTGTCAAAGCCAACATATCAATTATACGCCTTCCTTGACGTTTGAAAAGTCTTTTTCCAATGCTATAGCTCACCTTAATTCGCTTGTTCCCACCATTAATCATGAGAATCAAGAATTAACTACTAGCATATTCCAAACTCTCACCTTGTCTGATTCACAGCCAATGGCTATATTATCTTCTCAATGCGTTGGATGTTCTCCCTCGGAAAGTTCCCTCCCGTTAGGTGTTGGATTTCATCAAAATAACATTGTCAATTATGGGCCTTTAGATGGCAGATCAACGGCTAATACAGAAGTTGGAGATGCTTATTTCAATGATCAAGGAATAAAGAGGGACGAAAATCATGAAATGCCTCTCAACTATGAGCAAGTGACTAGTCATAAAGTGAACCAAAAAAAGAAAAGGAAGAAAGTAACTTCTGGTCATGATGGCAAACGCTGCAGTTGTCAGAAGAGCGAATGCACGAAACTTTATTGTGAATGTTTTTCTGCTGGGCTTTATTGTGGTGAAACATGCACCTGCGAAGAATGCATTAACAGACCCAAATACGAAGAAACAGTTCTTAACATACGCACAAAGATTGAGACAAGGAATCCAAATGCATTCACTCCAACTTTAGTGCCACGCCAGAAAGAGCAATCACTATGCGGTGGAACCCAGTTAGATCTCACTAATTCAAAGCACAGAAGAGGATGCAACTGCACGAAGTCAAAGTTTCATCCATATCAAGCAATAACACCGTTTAATTTTGTGACAAGGCTAATGTCAAATGCGCCGAAGGATGTCGTTGTGAGGGCTGTAAAAATACTTACAATCCAGAAGAAGGTAGTTTCTGAATTCTTGCAATCACCTTCATCGCTATCATCTGCCAGATTGTGTTATTTCATGTTACAATCTGTTAGGTACCCCTTGGATCACTAG 1872 41.24 MTSAAMAAYDLTPRMAPSLDCHLLFPLLDFLQERQVHPDEQILLFKMELLMKTHMVDCAWSVHNYLFNSKEVPQNMVEKKAQVNVRLRELEGWAAPMVFLLQNAYALQCLTADKDYNLQMLHNRYKIGSEQIQALYEYAKFLFESGKYAVVAKYFGLYIPLSTNTELRFSAMWGKLAAEILLKNWNAALLDLYRLKDIIDLEIFESPMNLVEIRLWLLHWSLFIFFNHDNGRALIIDLFNQDNALAMRLISTHEGAERCTTIQDSRLDVGIDAVMEPNHSNVSINAQSTITNDFRNDGEGQTFFEISENLRESGRQVCQSQHINYTPSLTFEKSFSNAIAHLNSLVPTINHENQELTTSIFQTLTLSDSQPMAILSSQCVGCSPSESSLPLGVGFHQNNIVNYGPLDGRSTANTEVGDAYFNDQGIKRDENHEMPLNYEQVTSHKVNQKKKRKKVTSGHDGKRCSCQKSECTKLYCECFSAGLYCGETCTCEECINRPKYEETVLNIRTKIETRNPNAFTPTLVPRQKEQSLCGGTQLDLTNSKHRRGCNCTKSKFHPYQAITPFNFVTRLMSNAPKDVVVRAVKILTIQKKVVSEFLQSPSSLSSARLCYFMLQSVRYPLDH 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 28037524 28041736 - BLOR21509 Blo16g00722 71913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00722 623 Pfam eIF3 subunit 6 N terminal domain 10 141 IPR019010 -
Blo16g00722 623 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 6 246 - -
Blo16g00722 623 SMART eIF3_N_2 10 142 IPR019010 -
Blo16g00722 623 MobiDBLite consensus disorder prediction 441 460 - -
Blo16g00722 623 ProSiteProfiles CRC domain profile. 460 554 IPR005172 -
Blo16g00722 623 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 6 246 IPR016650 GO:0003743|GO:0005737|GO:0005852
Blo16g00722 623 SMART CXC_2 459 500 IPR033467 -
Blo16g00722 623 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 462 497 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01240 Blo-Chr7:32455567 Blo16g00722 Blo-Chr16:28037524 1.23E-103 dispersed
Blo16g00722 Blo-Chr16:28037524 Blo16g01025 Blo-Chr16:38605507 1.33E-06 dispersed
Blo16g00722 Blo-Chr16:28037524 Blo02g00527 Blo-Chr2:8671327 4.49E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13426 PF09440 eIF3_N 2.00E-36 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00722 K03250 - cpap:110807170 303.908