Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00725 ATGGCTTCCTCGTCGGCCTCCAGCACCACAAACATCATGCTCGCCATCTTCGAGAAGAAAACAACTCAAATCGATCTCTATCGTCCCCTGCGCAACTATATCGCCTTTCATTACTCTGAACGTGAAGCTCAAAACCTCGAAGATGACCTCCAAACCCTCAAACAGTACCGGTCGGACCTCGAGCGCCAATCCGATCCCTCTCCGGCCTCTCGCCGCGATCTTCTCCAGAATTATTTCAAAGCCCTATGCCTTGTTGAATCCCGATTCCCCATCTCACCGGATAAGGACCACATAAATACTCTTACCTTCGTCTGGTTCGATGCGTTTAAGCAGAAGCAGAAGGCTTCGCAGCAGAATGTTCATCTTGAGAAGGCTGCGGTTTTGTTCAATTTGGGCGCTGTTTACAGCCAGATTGGTCTGTCGTATGATCGATCTACTGTTGAAGGGAGGCGTCAAGCCTCACACGCTTTTATTGCTGCGGCTGGGGCGTTTGCTTTCTTGAGAGACAATGCAGCGACCAAGGCCTCAATTGGAAGCTCGACGACAGTGGATGTGTCAGTTGAGTGCGCGGGAATGTTGGAGAGATTGATGCTGGCTCAGGCACAGGAGTGCGTTTTTGAGAATACCATCGCCAAAGGGAGTACGCCGGGTGTTTGTGCGAAAATCTCTAGGCAGGTTGGGTTGTACTATGAAGAAGCTTTGGCTGCACTTAATGCTTCGCCTCTCAGCCAGCATTTTGACAAGGCCTGGATTTCTCATGTGCAACTAAAAGCGGGTCTTTTTTTCACTGAAGCCTGTTATCGGTGTGGCATGGAGCTCCATGAGAAGGAAGAAATTGCTGAGGAAATTGCACGGTTGAGAAGTGGGATTAATGCTCTAAATGAGATCAAAAAGTCCTCAAGGGGTGCTGCTGCTCAGCTCCTCGATGCTGTTAGCAAGTTAGAGGCCAATTTAAATCAGAACTTGGAGAGGGCAGTGAAAGAGAATGATAGAGTTTACCTCATGAGAATTCCTAACCCGAGTTCTTTGCCTCCTCTCTCAGCCTTTTCAATGGTAAAGTCAATGGCGATGAATGAAGTGTTGGATGCAAGCAAGGAGAAAATGTTTGCAAGTCTTGTGCCAGATAGCAGTGCCAAATCACTTTCCAGGTATACTGAAATGGTTGATGATATAATCAGGACACAAGCTGAAAAGCTTCAGCAAGCAAGTGAACTAACTCGAGTAAAGCTCAAGGAAATGGACCTACCAGATTCTATTCTTGCTTTGGAAGGAAATTTTACAGTGCCTATTGAGCTTAAAGAAGATGTGGAGGCAGTGCAGATTAGTGGGGGTCCAGCAGGTTTGGAAGCTGAGCTACAGCAAGTCAAGGATTTAAGGAGGGTAAATAATGAACTGCTTGTCCAGACCGAGGAACTCTTGCAGAAAGAGGCAAGAGAGGATGCTCAGTTTAGAGGTCAATTTGGAACACGATGGAGTAGACCTCACTCTAGCACTTTGACAAAGAACTTGCAGGACAGGTTGAGCAAGTTTGCTAGTAACTTGAAGCAGGCTGCAGATAGTGATGGTCGGATAGAGCGTTCTGTCCGAGAACATGCAGTCCTTGTGTCAATTCTTGATAAACGCCCAATTGAATCTTCCCTCCCAACTTTGGCCAGACCCATTATGTCTTTAGATGCCAATGAAGATTCTGTTGTGGGAGATCTGAAGCAGAGTCTGAGGCAATTGGAAACTCTTGGTGCTCAACGTGCTGGTCTAGAAGATATGCTTAAAGAGATGAAGAGGAAGGATGATATTCTACCAAAGTTGATGACGTCAACTGGCTCGTATGAAGATCTTTTCAAGAAAGAGATTTCAAAATATGAGCATATTTGTGAGGACATTTCTCAAAACATTGATGCCCAAGAACAATTGTTACTGCAAATTCAGGCACAAAATGATGAATTTGCTGCCTTATTTAATCTTGAAGATTACAAAGGTCGGCCTTGTTTGATGTATATTATGTATGTTTATGTATGTATGTATATAAGCGTTGTTTGTCTTCTCTGTATGATAGTACCCTCTCTTTTTAAGTTAACTCCCTTTCAATTTCTTCCAGCATCTTGCCAAAAATGTTATAAGCAGATTGAAGCTGCAATAGCCAAGTATCGAGAAATTAAGGACAACATCAACGAAGGATTAAAATTCTATGTCACTCTTCAAGAAGCAATTACAAACATAAAGCAGCAGTGTAGTGATTATGTGATGACAAGAAACATCCAATGCCGAGAAATGATCGAAGATGTACAAAGACATATGGCTGGTCTCAGTTTCCAGGGCGCAAAAAATGCCGGAGCTTATAACTACCCTCCTGCAGGGCATCAAGCTCAAAGATCCATCTCTCAACCACAATCCGATTCTCGACACATGGCTTCTTATTACCAATCTCCCGACCAGCAGGTGGGGCACGGCTATGCTCCCCCTATGTATAACCCCACACATCATCCACCACCTTCGTACCATATGCCCCCAAATTCTGGCCAATATCCGCCGCCTCAGGCTCAGCAGGCTGCTCCAACAAGTCACGAGTATGGCCAGCCAGCCTATGCCGGGTGGAGAGGCTCGTATTACAATGCTCAGGCGCAGCAGCCAGATCCTGCTCTCGGGCCTCCTTACACCATTCCAGCACCATACCCCCCTCACCAAAGTGGTTGTTTTCTGGTGAGAGAAAGTAGCTGCTTATTTATTGATGGATGGATATATCCTACCATTTTTGAGGAATATTGTAAACATTCAACAACACTAGCCCTTCTCTCCTCTCTCTCCAAAGCTCGCTCGCTCCTCTTCTCCCCGAAGCACGAAGGCAAAGACGAAGATGACGACGACGGCTTGAAGCAAAGCTCGACTCTGCGAAGCGATCTCTGGCTGGACGAAGACGAACCCTGCTCTGCGAAGGGTTCCCTGGGCTCAACGAAAGGGACCTCGTCTCTGCAAAGACGAAGCAAAGCCCCTTGCAGCTCGATTAGGGGAGCCAAAATTGCGAAGGGAGAGAGGAGAGACGCGAGAAAGAGAGGGAGAGGTGAGCAGCGCTCGGGCGCGACGAAGAGGAGCGATCGGAGCGACGAACGGAGGCGAGGGCAAAGGAGGACAGCGCGACGGTGGGCTCGGGTGTTCGAGGGGGGAACGGCGACGCAGGTGCGGCTAGGGCTCGGTTTGTGGGCGTTGGATGGTTCGACGGCCATGGCTTCGGGCCATCGGTGCTACGGCGGTGTCCTACGATCATGCAGCCAAAAATTTGCGGGGCGCTCAAGAGCTACGGCGAGAAGGCAGTGGACCGATGATGATGAATGGCTGTGGCAGGGGGAGCTCCGGTTCGCTGGGACTCGGTTCGCGAATGGGTTGACGGTCCATCTTGTGGTTTGGACCAAACAGGTACTTCTCCCCTGGTTTTTTTCTGATGAAGCCGACAATTTACAGGCTGGATGCAGGGATTGCCTGGCATGGGGAATGCAACAGGAATCGCAGAGTGTTTTTGGCTAG 3516 48.24 MASSSASSTTNIMLAIFEKKTTQIDLYRPLRNYIAFHYSEREAQNLEDDLQTLKQYRSDLERQSDPSPASRRDLLQNYFKALCLVESRFPISPDKDHINTLTFVWFDAFKQKQKASQQNVHLEKAAVLFNLGAVYSQIGLSYDRSTVEGRRQASHAFIAAAGAFAFLRDNAATKASIGSSTTVDVSVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNASPLSQHFDKAWISHVQLKAGLFFTEACYRCGMELHEKEEIAEEIARLRSGINALNEIKKSSRGAAAQLLDAVSKLEANLNQNLERAVKENDRVYLMRIPNPSSLPPLSAFSMVKSMAMNEVLDASKEKMFASLVPDSSAKSLSRYTEMVDDIIRTQAEKLQQASELTRVKLKEMDLPDSILALEGNFTVPIELKEDVEAVQISGGPAGLEAELQQVKDLRRVNNELLVQTEELLQKEAREDAQFRGQFGTRWSRPHSSTLTKNLQDRLSKFASNLKQAADSDGRIERSVREHAVLVSILDKRPIESSLPTLARPIMSLDANEDSVVGDLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYEDLFKKEISKYEHICEDISQNIDAQEQLLLQIQAQNDEFAALFNLEDYKGRPCLMYIMYVYVCMYISVVCLLCMIVPSLFKLTPFQFLPASCQKCYKQIEAAIAKYREIKDNINEGLKFYVTLQEAITNIKQQCSDYVMTRNIQCREMIEDVQRHMAGLSFQGAKNAGAYNYPPAGHQAQRSISQPQSDSRHMASYYQSPDQQVGHGYAPPMYNPTHHPPPSYHMPPNSGQYPPPQAQQAAPTSHEYGQPAYAGWRGSYYNAQAQQPDPALGPPYTIPAPYPPHQSGCFLVRESSCLFIDGWIYPTIFEEYCKHSTTLALLSSLSKARSLLFSPKHEGKDEDDDDGLKQSSTLRSDLWLDEDEPCSAKGSLGSTKGTSSLQRRSKAPCSSIRGAKIAKGERRDARKRGRGEQRSGATKRSDRSDERRRGQRRTARRWARVFEGGTATQVRLGLGLWALDGSTAMASGHRCYGGVLRSCSQKFAGRSRATARRQWTDDDEWLWQGELRFAGTRFANGLTVHLVVWTKQVLLPWFFSDEADNLQAGCRDCLAWGMQQESQSVFG 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 28153652 28168989 + BLOR21512 Blo16g00725 71916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00725 1171 Gene3D alix/aip1 like domains 420 551 - -
Blo16g00725 1171 MobiDBLite consensus disorder prediction 974 1042 - -
Blo16g00725 1171 CDD V_Alix_like_1 374 750 - -
Blo16g00725 1171 Coils Coil 304 328 - -
Blo16g00725 1171 MobiDBLite consensus disorder prediction 822 842 - -
Blo16g00725 1171 Pfam ALIX V-shaped domain binding to HIV 428 752 IPR025304 GO:0005515
Blo16g00725 1171 ProSiteProfiles BRO1 domain profile. 11 406 IPR004328 -
Blo16g00725 1171 Coils Coil 276 296 - -
Blo16g00725 1171 MobiDBLite consensus disorder prediction 979 995 - -
Blo16g00725 1171 Pfam BRO1-like domain 13 391 IPR004328 -
Blo16g00725 1171 Coils Coil 43 63 - -
Blo16g00725 1171 Gene3D alix/aip1 in complex with the ypdl late domain 374 652 - -
Blo16g00725 1171 MobiDBLite consensus disorder prediction 780 857 - -
Blo16g00725 1171 Coils Coil 575 595 - -
Blo16g00725 1171 PANTHER PCD6 INTERACTING PROTEIN-RELATED 698 893 IPR045251 GO:0071985
Blo16g00725 1171 MobiDBLite consensus disorder prediction 1004 1042 - -
Blo16g00725 1171 Coils Coil 624 644 - -
Blo16g00725 1171 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 698 893 - -
Blo16g00725 1171 Gene3D alix/aip1 like domains 8 373 IPR038499 -
Blo16g00725 1171 MobiDBLite consensus disorder prediction 786 811 - -
Blo16g00725 1171 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 5 660 - -
Blo16g00725 1171 SMART BRO1_2 12 396 IPR004328 -
Blo16g00725 1171 PANTHER PCD6 INTERACTING PROTEIN-RELATED 5 660 IPR045251 GO:0071985
Blo16g00725 1171 Coils Coil 448 478 - -
Blo16g00725 1171 CDD BRO1_Alix_like_1 13 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00725 K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein - jre:109007972 1315.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00742 Blo16g00725 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00725 Blo-Chr16:28153652 Blo04g00936 Blo-Chr4:11119382 3.90E-12 dispersed
Blo02g00910 Blo-Chr2:35150638 Blo16g00725 Blo-Chr16:28153652 7.87E-19 transposed
Blo08g00541 Blo-Chr8:16016176 Blo16g00725 Blo-Chr16:28153652 2.07E-19 transposed
Blo01g00742 Blo-Chr1:9726592 Blo16g00725 Blo-Chr16:28153652 4.88E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g393 Blo01g00742 Blo16g00725 . Bda11g00157 Bpe13g01041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0415 Cone9ag0438 . Csa05g02045 . . . . . Bda11g00157 . . Bma01g00446 Bma06g01101 . . Cmo15g00979 . Cma15g00940 . Car15g00882 Cpe13g00383 . Bhi12g00868 . . . . . Lcy10g1452 Cla01g00590 Cam01g0617 Cec01g0607 Cco01g0633 Clacu01g0609 Cmu01g0582 Cre09g1923 Lsi09g00639 . Chy09g00875 Cme09g01408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007554 2 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00725 Blo_Chr16 FPKM 45.63866 51.159294 35.361885 36.081062 17.478605 20.124975 17.019821 38.960136 35.831448 36.94416