Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00898 ATGACGAGCTGCGTCAATGTTGCACCTGAGCAACTTTGCTACATACCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCTGCAATATGTTTGACATTGTCACCGTCCTATGTGGTCACTGCACAAATCTCTGGTCTGTGAACATGGCATCTGCATTTCAGTCACTTTCATGGCAAGATCCCCAGGCTCAAATTTACTCCTACAATCCACCCTACCATTATCGAATCGACTCAGGTTCCTCGTCCAAATGCAACAACAAGATGACACTTCGTCCTCCAACCAAAAACTCAAATTCAGCTGAGAGGCTTGTGAATCGAACTCCCGAGAAGAGGCAGAGGGTTCCTACTGCATATAATCAGTTCATAAAGGAAGAAATTCAGAGGATCAAGGCCAATAAGCCAGATATTACACACAGGGAAGCATTTACCACTGCTGCAAAAAATTGGGCACACTTCCCTCATATTCAGTATTCACTTTGGTCAGATGCTAGAAACAAACAACCTGGCCAAGGCTGA 525 44.38 MTSCVNVAPEQLCYIPCNFCNIVLAVSVPCCNMFDIVTVLCGHCTNLWSVNMASAFQSLSWQDPQAQIYSYNPPYHYRIDSGSSSKCNNKMTLRPPTKNSNSAERLVNRTPEKRQRVPTAYNQFIKEEIQRIKANKPDITHREAFTTAAKNWAHFPHIQYSLWSDARNKQPGQG 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 36804288 36806471 + BLOR21685 Blo16g00898 72089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00898 174 MobiDBLite consensus disorder prediction 93 115 - -
Blo16g00898 174 PANTHER AXIAL REGULATOR YABBY 5 1 169 - -
Blo16g00898 174 Pfam YABBY protein 8 162 IPR006780 GO:0007275
Blo16g00898 174 Gene3D High mobility group box domain 107 170 IPR036910 -
Blo16g00898 174 SUPERFAMILY HMG-box 104 157 IPR036910 -
Blo16g00898 174 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00898 K25796 YAB; plant-specific transcription factor YABBY family protein - mnt:21395565 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00771 Blo-Chr14:23660301 Blo16g00898 Blo-Chr16:36804288 7.48E-81 dispersed
Blo16g00898 Blo-Chr16:36804288 Blo16g01078 Blo-Chr16:39331050 1.71E-31 dispersed
Blo01g00625 Blo-Chr1:6967807 Blo16g00898 Blo-Chr16:36804288 1.21E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g01078 . 2 177 C2C2-YABBY Transcription Factor Family AT1G69180 53.6 1.1e-44 176.8
Blo01g00279 . 59 213 C2C2-YABBY Transcription Factor Family AT2G45190 63.5 4.5e-50 194.5
Blo12g00165 . 59 190 C2C2-YABBY Transcription Factor Family AT2G45190 65.7 4.5e-42 167.9
Blo02g01054 CCT 64 219 C2C2-YABBY Transcription Factor Family AT2G45190 54.2 6.5e-41 164.1
Blo03g00407 CCT 66 220 C2C2-YABBY Transcription Factor Family AT2G45190 56.0 1.9e-40 162.5
Blo02g01054 CCT 21 193 C2C2-YABBY Transcription Factor Family AT1G08465 56.1 7.0e-44 174.1
Blo14g00771 . 11 169 C2C2-YABBY Transcription Factor Family AT1G08465 57.9 2.2e-42 169.1
Blo03g00407 CCT 23 197 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 2.9e-42 168.7
Blo01g00625 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 3.8e-42 168.3
Blo12g00165 . 17 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.0 8.0e-40 160.6
Blo01g00279 . 17 190 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 1.8e-39 159.5
Blo01g00279 . 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 8.2e-49 190.7
Blo03g00407 CCT 33 219 C2C2-YABBY Transcription Factor Family AT4G00180 53.4 9.0e-48 187.2
Blo12g00165 . 27 190 C2C2-YABBY Transcription Factor Family AT4G00180 56.7 7.2e-45 177.6
Blo02g01054 CCT 31 217 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 9.4e-45 177.2
Blo11g00921 . 3 156 C2C2-YABBY Transcription Factor Family AT1G23420 66.5 2.2e-43 172.9
Blo01g00625 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 75.0 1.7e-65 245.7
Blo14g00771 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 70.1 1.1e-59 226.5
Blo16g00898 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 65.9 5.6e-53 204.1
Blo02g01054 CCT 21 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 4.8e-44 174.5
Blo03g00407 CCT 23 185 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.4e-43 172.2
Blo01g00279 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 7.6e-42 167.2
Blo12g00165 . 17 181 C2C2-YABBY Transcription Factor Family AT2G26580 53.3 1.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13438 PF04690 YABBY 1.70E-62 CL0114 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00898 Blo_Chr16 FPKM 7.531155 6.637963 5.940325 4.528666 0.620557 0.854629 0.715481 0.940744 0.627216 0.0