Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00936 ATGCGAAGTGCGAACTGGCTCAGTCTCGAACGACAGAACGACTGCGACGGAAGCTCTTTGAGCAGGACAGGGACTGCGAAGTCGTCGTGCGCAGTCTTGCAAAGTCATCGGAACTGGCTCTGTCGTCGTGCACCGTCTCGCGAAGTCGCCTCTTCTCTCGGTCTCGCGACCGAGACTCCACTCTCCAGTGGAGTCACTCCACTCAACCAACGGTCTGAAGACCGTTGGCGAGTGGCGATGGCAACGGTCACTAGACCGTTGCCTGTTGGCTGTTGTCGTCTGAGGGCTCGACTGAGCCTCTCAGCTGTTGGCTGCCATGTTGGGCAACGGTCCAAAGACCGTTGCCCAATGATCCCAACACAGCAACGGTCTTCAGACCGTTGCTGTGTATTTCAGCTTCAGGCTGAAATGAGATCAAGCAACGGTCTTGAGACCGTTGCTTGCTTGATCCAACGGCTTGGAGAAGAAAGTCTGGCTTTTCCCATTACCTGCAACTGCCCTGCTGTACATATAATGGTTATGGGGATTGCAGCGAAGCCATGCGACTCCTGCAAATTGGCGCCGGCGGTTTTGTTTTGTCGGAGCGACGCCTTTTTCCTCTGCCTCAGATGTGATGCAGAGATTCACAAGCTTGGCCTCCGGCACGAGCGTGTTTGGATGTGTGAGGTCTGCGAGCAAGCTCCGGCTGTCGTCACCTGCAAAGCCGACGCTGCCACTCTCTGCGTCACATGTGACGCGGATATCCACTCCGCCAATCCTCTCGCCCGCCGCCATGAGCGGGTCCCCGTGGAGTCATTTTTCAACTCAGCCGAGTCGATGGTAAAGTCGTCTTCTGCAGCCTTCAACTTCCTCGTTTCTAATGGAGCTGATATCGGAGTCGCTAGTGGTGGCCGGAAGGACGACGGTGAGGGGGCGTCGTGGCCTCTAATGAACCAAAACCTCAACTCGAAGCTAATAGAGGGAGAGCAATTGAAGTCTGAAGATATGTTTTTCTCGGAAATGGATTCGTTCATCGATTTTGAATATTCCAACCCAATCACCGGAAATGACAGCGTCGTTCCTGTCCAGACTAAGCATATATCGGCGACGGCGATCAATCATTCCAATGAAAACTGTTTCAATATCGACTTTTGCCGATCCAAACTGAACTCATTTAGCTACCCATCTCACACAATAAGCCATAGCATTTCTTCTTCGTCGTTGGATGTCGGAATTGTTCCAGACGGGGGAAACTGCTTCTCCGAAATATCGCATTCTTTCGGCCGCAGTGTTGTTGAACCGTGCATATCGGTGTCTGCGACGACGGAACAGGCGGTGCCGCTGTGTGGATTAGATCGGGAGGCGAAGGTTTTAAGGTACAAAGAGAAGAAGAAGAACCGGAGGTTCGAGAAAACTATACGCTACGCCTCGAGAAAGGCTTACGCAGAAACTCGGCCGAGAATTAAAGGCCGATTCGCGAAACGAAACGACATCCACTCCGACGTCGACCGAATGTACACTTCGGTTTCCTCTAATTTCCACGCCGAACCTCAATTCGGCATCGTTCCGTCATTTTGA 1557 52.6 MRSANWLSLERQNDCDGSSLSRTGTAKSSCAVLQSHRNWLCRRAPSREVASSLGLATETPLSSGVTPLNQRSEDRWRVAMATVTRPLPVGCCRLRARLSLSAVGCHVGQRSKDRCPMIPTQQRSSDRCCVFQLQAEMRSSNGLETVACLIQRLGEESLAFPITCNCPAVHIMVMGIAAKPCDSCKLAPAVLFCRSDAFFLCLRCDAEIHKLGLRHERVWMCEVCEQAPAVVTCKADAATLCVTCDADIHSANPLARRHERVPVESFFNSAESMVKSSSAAFNFLVSNGADIGVASGGRKDDGEGASWPLMNQNLNSKLIEGEQLKSEDMFFSEMDSFIDFEYSNPITGNDSVVPVQTKHISATAINHSNENCFNIDFCRSKLNSFSYPSHTISHSISSSSLDVGIVPDGGNCFSEISHSFGRSVVEPCISVSATTEQAVPLCGLDREAKVLRYKEKKKNRRFEKTIRYASRKAYAETRPRIKGRFAKRNDIHSDVDRMYTSVSSNFHAEPQFGIVPSF 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 37439896 37445075 - BLOR21723 Blo16g00936 72127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00936 518 CDD Bbox1_BBX-like 180 220 - -
Blo16g00936 518 Pfam CCT motif 446 488 IPR010402 GO:0005515
Blo16g00936 518 Pfam B-box zinc finger 179 218 IPR000315 GO:0008270
Blo16g00936 518 Pfam B-box zinc finger 218 263 IPR000315 GO:0008270
Blo16g00936 518 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 175 518 IPR045281 GO:0009909
Blo16g00936 518 SMART bboxneu5 176 220 IPR000315 GO:0008270
Blo16g00936 518 SMART bboxneu5 221 263 IPR000315 GO:0008270
Blo16g00936 518 ProSiteProfiles Zinc finger B-box type profile. 176 220 IPR000315 GO:0008270
Blo16g00936 518 ProSiteProfiles Zinc finger B-box type profile. 216 263 IPR000315 GO:0008270
Blo16g00936 518 ProSiteProfiles CCT domain profile. 446 488 IPR010402 GO:0005515
Blo16g00936 518 CDD Bbox1_BBX-like 221 263 - -
Blo16g00936 518 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 175 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00936 - - - zju:107415202 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00433 Blo-Chr15:6317381 Blo16g00936 Blo-Chr16:37439896 1.27E-10 dispersed
Blo16g00838 Blo-Chr16:35331759 Blo16g00936 Blo-Chr16:37439896 1.18E-06 dispersed
Blo16g00936 Blo-Chr16:37439896 Blo06g00086 Blo-Chr6:3321233 1.00E-18 dispersed
Blo19g00329 Blo-Chr19:21800564 Blo16g00936 Blo-Chr16:37439896 1.65E-08 dispersed
Blo16g00936 Blo-Chr16:37439896 Blo07g00009 Blo-Chr7:224838 3.39E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00936 . 175 518 C2C2-CO-like Transcription Factor Family AT5G57660 53.1 6.2e-65 245.0
Blo04g00532 . 1 191 C2C2-CO-like Transcription Factor Family AT1G75540 56.5 3.5e-54 209.1
Blo07g00980 . 1 295 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 3.3e-73 272.3
Blo06g00321 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 2.2e-52 202.2
Blo16g00074 BCT,CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT2G21320 56.4 1.2e-50 196.4
Blo06g00321 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.1 1.3e-53 206.5
Blo16g00074 BCT,CCT,ECH 1 179 C2C2-CO-like Transcription Factor Family AT4G38960 58.1 8.2e-53 203.8
Blo04g00894 BCT,CCT,ECH 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 9.1e-44 173.7
Blo04g00532 . 1 184 C2C2-CO-like Transcription Factor Family AT4G39070 55.4 3.4e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13440 PF00643 zf-B_box 3.30E-06 No_clan Blo TF