Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00936 ATGCGAAGTGCGAACTGGCTCAGTCTCGAACGACAGAACGACTGCGACGGAAGCTCTTTGAGCAGGACAGGGACTGCGAAGTCGTCGTGCGCAGTCTTGCAAAGTCATCGGAACTGGCTCTGTCGTCGTGCACCGTCTCGCGAAGTCGCCTCTTCTCTCGGTCTCGCGACCGAGACTCCACTCTCCAGTGGAGTCACTCCACTCAACCAACGGTCTGAAGACCGTTGGCGAGTGGCGATGGCAACGGTCACTAGACCGTTGCCTGTTGGCTGTTGTCGTCTGAGGGCTCGACTGAGCCTCTCAGCTGTTGGCTGCCATGTTGGGCAACGGTCCAAAGACCGTTGCCCAATGATCCCAACACAGCAACGGTCTTCAGACCGTTGCTGTGTATTTCAGCTTCAGGCTGAAATGAGATCAAGCAACGGTCTTGAGACCGTTGCTTGCTTGATCCAACGGCTTGGAGAAGAAAGTCTGGCTTTTCCCATTACCTGCAACTGCCCTGCTGTACATATAATGGTTATGGGGATTGCAGCGAAGCCATGCGACTCCTGCAAATTGGCGCCGGCGGTTTTGTTTTGTCGGAGCGACGCCTTTTTCCTCTGCCTCAGATGTGATGCAGAGATTCACAAGCTTGGCCTCCGGCACGAGCGTGTTTGGATGTGTGAGGTCTGCGAGCAAGCTCCGGCTGTCGTCACCTGCAAAGCCGACGCTGCCACTCTCTGCGTCACATGTGACGCGGATATCCACTCCGCCAATCCTCTCGCCCGCCGCCATGAGCGGGTCCCCGTGGAGTCATTTTTCAACTCAGCCGAGTCGATGGTAAAGTCGTCTTCTGCAGCCTTCAACTTCCTCGTTTCTAATGGAGCTGATATCGGAGTCGCTAGTGGTGGCCGGAAGGACGACGGTGAGGGGGCGTCGTGGCCTCTAATGAACCAAAACCTCAACTCGAAGCTAATAGAGGGAGAGCAATTGAAGTCTGAAGATATGTTTTTCTCGGAAATGGATTCGTTCATCGATTTTGAATATTCCAACCCAATCACCGGAAATGACAGCGTCGTTCCTGTCCAGACTAAGCATATATCGGCGACGGCGATCAATCATTCCAATGAAAACTGTTTCAATATCGACTTTTGCCGATCCAAACTGAACTCATTTAGCTACCCATCTCACACAATAAGCCATAGCATTTCTTCTTCGTCGTTGGATGTCGGAATTGTTCCAGACGGGGGAAACTGCTTCTCCGAAATATCGCATTCTTTCGGCCGCAGTGTTGTTGAACCGTGCATATCGGTGTCTGCGACGACGGAACAGGCGGTGCCGCTGTGTGGATTAGATCGGGAGGCGAAGGTTTTAAGGTACAAAGAGAAGAAGAAGAACCGGAGGTTCGAGAAAACTATACGCTACGCCTCGAGAAAGGCTTACGCAGAAACTCGGCCGAGAATTAAAGGCCGATTCGCGAAACGAAACGACATCCACTCCGACGTCGACCGAATGTACACTTCGGTTTCCTCTAATTTCCACGCCGAACCTCAATTCGGCATCGTTCCGTCATTTTGA 1557 52.6 MRSANWLSLERQNDCDGSSLSRTGTAKSSCAVLQSHRNWLCRRAPSREVASSLGLATETPLSSGVTPLNQRSEDRWRVAMATVTRPLPVGCCRLRARLSLSAVGCHVGQRSKDRCPMIPTQQRSSDRCCVFQLQAEMRSSNGLETVACLIQRLGEESLAFPITCNCPAVHIMVMGIAAKPCDSCKLAPAVLFCRSDAFFLCLRCDAEIHKLGLRHERVWMCEVCEQAPAVVTCKADAATLCVTCDADIHSANPLARRHERVPVESFFNSAESMVKSSSAAFNFLVSNGADIGVASGGRKDDGEGASWPLMNQNLNSKLIEGEQLKSEDMFFSEMDSFIDFEYSNPITGNDSVVPVQTKHISATAINHSNENCFNIDFCRSKLNSFSYPSHTISHSISSSSLDVGIVPDGGNCFSEISHSFGRSVVEPCISVSATTEQAVPLCGLDREAKVLRYKEKKKNRRFEKTIRYASRKAYAETRPRIKGRFAKRNDIHSDVDRMYTSVSSNFHAEPQFGIVPSF 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 37439896 37445075 - BLOR21723 Blo16g00936 72127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00936 518 CDD Bbox1_BBX-like 180 220 - -
Blo16g00936 518 Pfam CCT motif 446 488 IPR010402 GO:0005515
Blo16g00936 518 Pfam B-box zinc finger 179 218 IPR000315 GO:0008270
Blo16g00936 518 Pfam B-box zinc finger 218 263 IPR000315 GO:0008270
Blo16g00936 518 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 175 518 IPR045281 GO:0009909
Blo16g00936 518 SMART bboxneu5 176 220 IPR000315 GO:0008270
Blo16g00936 518 SMART bboxneu5 221 263 IPR000315 GO:0008270
Blo16g00936 518 ProSiteProfiles Zinc finger B-box type profile. 176 220 IPR000315 GO:0008270
Blo16g00936 518 ProSiteProfiles Zinc finger B-box type profile. 216 263 IPR000315 GO:0008270
Blo16g00936 518 ProSiteProfiles CCT domain profile. 446 488 IPR010402 GO:0005515
Blo16g00936 518 CDD Bbox1_BBX-like 221 263 - -
Blo16g00936 518 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 175 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00433 Blo-Chr15:6317381 Blo16g00936 Blo-Chr16:37439896 1.27E-10 dispersed
Blo16g00838 Blo-Chr16:35331759 Blo16g00936 Blo-Chr16:37439896 1.18E-06 dispersed
Blo16g00936 Blo-Chr16:37439896 Blo06g00086 Blo-Chr6:3321233 1.00E-18 dispersed
Blo19g00329 Blo-Chr19:21800564 Blo16g00936 Blo-Chr16:37439896 1.65E-08 dispersed
Blo16g00936 Blo-Chr16:37439896 Blo07g00009 Blo-Chr7:224838 3.39E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13440 PF00643 zf-B_box 3.30E-06 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00936 - - zju:107415202 429.869