Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00969 ATGCCTTTGCATCTAACTCCTAATTCGATTTCCGCCATTATCGCCGGCGATGTGAATTCGAAGCCTCTCGTTCAGGTTCTGGATATTAAGGCTATCGGTAACGCGCAGGAGAGATACCGGCTCTTAATCTCCGACGCTGTTTCGTCGCAACACGCAATGCTCGCGACTCAGCTTAATCACTCGGTCAAGAATGGTCTAGTAAAGAAAGGATCTGTCGTCCAATTGATCGAGTACATTTGTAGCCCCATCCATAATCGCAAGATTATTATGGTGCTTACCATGGAAACTATAATACTGGATTGCGAGATCATTGGAAATCCAAAATCATTAACAGCTGGCGATTCCACTTCTCAGATGTTAACTAATAACAATGTAAAGCAAAGTGTAAAGTTTAGTAATGGTCAATTGAGTTCCCAAAGATCTGAGCATAATATGCACAACTTTCAGCCAACTGTTCAACCTCCATATCAACCACCTCCAAATTATAGAAACAGTGGTCCAATGATGAAGAATGAAGCACCAGCACGCATCATTCCTATTTCAGCATTAAATCCTTATCAGGGCCGCTGGGCTGTGAAGGCAAGAGTTACAGCAAAAGGTGATCTTCGTCGCTACAATAATGCCCGAGGAGATGGTAAGGTATTTTCATTTGACCTTTTGGACTCGGATAGAGGAGAAATTAGAGTGACCTGTTTCAATGCTGTTGTTGATCGTTTCTATGAGCTTATAGAGGTTGGCAAGGTTTATTTAGTTTCAAAAGGCAATTTGAAGCCCGCCCAGAAGAACTTTAATCATTTGAAGAATGAATGGGAGATATTTTTGGAGGCAACTTCTACTGTGGATCTTTGCCCAGAGGAAGATGGCTCAATACCGAGACAACAATTTTCTTTCAGACCTATCAGGGAAATTGAGAATGTTGAAAACAATACTATACTTGATGTGATTGGTATTGTGATATCTGTGAACCCTTCCGTGCCTATATTAAGAAAGAACGGTATGGAAACACAGAGAAGAATTCTTAATTTAAAAGATGCATCTGGCAGGATTGTTGAGCTAACCTTGTGGGGAGAATTTTGCAATAGAGAAGGTCAACGACTTCAAGAATTGGTTGATTCTGAGGTTTTTCCAGTTCTAGCTGTGAAAGCTGGGAAGGTAAATGACTTCACTGGTAAATCTATAGGAACTATTTCTGCGACACAGCTCTTTATAAACCCTGATTTTCGAGAGGCTCACATCTTGAGAGATTGGTACGAACAAGGAGGTAAGAATGCATCTTCTTTGTCTATTTCTAAAGAAATTATGCCTGGAGGATCTAAGAATGAGATGAGGAAGACTGTATCTCAAATAAAAGAGGAAGGTCTTGGAAGATCTGATAAGCCTGACTGGATCACTGTGAAGGCAACCATATCTTTTATTAAAACTGACTCATTCTGTTATACTGCTTGCCCATTGATGATTGGAGATCGACAATGCAGCAAGAAAGTAACGAGGTTAGGAGACGCAAGATGGCAATGCGATAGGTGTAATCAGGACTTTGAGGAGTGTGATTACAGATATCTTCTTCAGGCTCAAATTCAAGACCATTCAGGATTGACTTGGGTGACTGCTTTTCAGGAAGCTGGGGAAGAAATATTGGGTGTGTCCGCTAAGGAGTTATACTTGTTGAAGTATGAAGAACAGGATGACACCAAGTTTGGAGAAATAATCCAAAGCAGAATTTTCACCCAATTCATGTTTAAGCTTAAAATCAACGAGGAGATGTATTGCGATGAACAGAGGATGAAAATTACAGTAGTGAAGGCCGATAGAGTGCACTATCAATCAGAGAGCAAATACATGCTGGATTTTCGGAGACAGAAAGTTCTCTCTGACAGATATTTGCAAGTGAAGAAATCAGGGCACGGTCTCGTTTTGCAGACATGGATCATAAGTCAAGAAAGTTCAGTGGTTTTGGAGAAATCAATGGAAGCAGAAATCTTAGATGATGCGCACAATACAAAGAAACCCATAGACAACTGA 2019 40.61 MPLHLTPNSISAIIAGDVNSKPLVQVLDIKAIGNAQERYRLLISDAVSSQHAMLATQLNHSVKNGLVKKGSVVQLIEYICSPIHNRKIIMVLTMETIILDCEIIGNPKSLTAGDSTSQMLTNNNVKQSVKFSNGQLSSQRSEHNMHNFQPTVQPPYQPPPNYRNSGPMMKNEAPARIIPISALNPYQGRWAVKARVTAKGDLRRYNNARGDGKVFSFDLLDSDRGEIRVTCFNAVVDRFYELIEVGKVYLVSKGNLKPAQKNFNHLKNEWEIFLEATSTVDLCPEEDGSIPRQQFSFRPIREIENVENNTILDVIGIVISVNPSVPILRKNGMETQRRILNLKDASGRIVELTLWGEFCNREGQRLQELVDSEVFPVLAVKAGKVNDFTGKSIGTISATQLFINPDFREAHILRDWYEQGGKNASSLSISKEIMPGGSKNEMRKTVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCSKKVTRLGDARWQCDRCNQDFEECDYRYLLQAQIQDHSGLTWVTAFQEAGEEILGVSAKELYLLKYEEQDDTKFGEIIQSRIFTQFMFKLKINEEMYCDEQRMKITVVKADRVHYQSESKYMLDFRRQKVLSDRYLQVKKSGHGLVLQTWIISQESSVVLEKSMEAEILDDAHNTKKPIDN 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 37955158 37958280 + BLOR21756 Blo16g00969 72160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 443 617 IPR012340 -
Blo16g00969 672 MobiDBLite consensus disorder prediction 133 157 - -
Blo16g00969 672 Gene3D - 289 429 IPR012340 -
Blo16g00969 672 Gene3D - 176 285 IPR012340 -
Blo16g00969 672 CDD RPA1_DBD_B 311 418 - -
Blo16g00969 672 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 3 617 - -
Blo16g00969 672 CDD RPA1_DBD_C 446 615 IPR013955 -
Blo16g00969 672 Gene3D - 430 616 IPR012340 -
Blo16g00969 672 Pfam OB-fold nucleic acid binding domain 191 272 IPR004365 GO:0003676
Blo16g00969 672 CDD RPA1N 10 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo16g00969 672 Gene3D - 4 111 IPR012340 -
Blo16g00969 672 Pfam Replication factor-A C terminal domain 462 613 IPR013955 -
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 294 424 IPR012340 -
Blo16g00969 672 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo16g00969 672 Pfam Replication protein A OB domain 300 404 IPR031657 -
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 176 289 IPR012340 -
Blo16g00969 672 MobiDBLite consensus disorder prediction 133 151 - -
Blo16g00969 672 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo16g00969 672 CDD RPA1_DBD_A 179 282 - -
Blo16g00969 672 PANTHER REPLICATION FACTOR A 1, RFA1 3 617 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00091 Blo-Chr3:3077096 Blo16g00969 Blo-Chr16:37955158 0 dispersed
Blo15g00339 Blo-Chr15:4088092 Blo16g00969 Blo-Chr16:37955158 2.22E-91 dispersed
Blo16g00969 Blo-Chr16:37955158 Blo06g01214 Blo-Chr6:35741905 1.45E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00969 K07466 - zju:107409151 1000.35