Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00969 ATGCCTTTGCATCTAACTCCTAATTCGATTTCCGCCATTATCGCCGGCGATGTGAATTCGAAGCCTCTCGTTCAGGTTCTGGATATTAAGGCTATCGGTAACGCGCAGGAGAGATACCGGCTCTTAATCTCCGACGCTGTTTCGTCGCAACACGCAATGCTCGCGACTCAGCTTAATCACTCGGTCAAGAATGGTCTAGTAAAGAAAGGATCTGTCGTCCAATTGATCGAGTACATTTGTAGCCCCATCCATAATCGCAAGATTATTATGGTGCTTACCATGGAAACTATAATACTGGATTGCGAGATCATTGGAAATCCAAAATCATTAACAGCTGGCGATTCCACTTCTCAGATGTTAACTAATAACAATGTAAAGCAAAGTGTAAAGTTTAGTAATGGTCAATTGAGTTCCCAAAGATCTGAGCATAATATGCACAACTTTCAGCCAACTGTTCAACCTCCATATCAACCACCTCCAAATTATAGAAACAGTGGTCCAATGATGAAGAATGAAGCACCAGCACGCATCATTCCTATTTCAGCATTAAATCCTTATCAGGGCCGCTGGGCTGTGAAGGCAAGAGTTACAGCAAAAGGTGATCTTCGTCGCTACAATAATGCCCGAGGAGATGGTAAGGTATTTTCATTTGACCTTTTGGACTCGGATAGAGGAGAAATTAGAGTGACCTGTTTCAATGCTGTTGTTGATCGTTTCTATGAGCTTATAGAGGTTGGCAAGGTTTATTTAGTTTCAAAAGGCAATTTGAAGCCCGCCCAGAAGAACTTTAATCATTTGAAGAATGAATGGGAGATATTTTTGGAGGCAACTTCTACTGTGGATCTTTGCCCAGAGGAAGATGGCTCAATACCGAGACAACAATTTTCTTTCAGACCTATCAGGGAAATTGAGAATGTTGAAAACAATACTATACTTGATGTGATTGGTATTGTGATATCTGTGAACCCTTCCGTGCCTATATTAAGAAAGAACGGTATGGAAACACAGAGAAGAATTCTTAATTTAAAAGATGCATCTGGCAGGATTGTTGAGCTAACCTTGTGGGGAGAATTTTGCAATAGAGAAGGTCAACGACTTCAAGAATTGGTTGATTCTGAGGTTTTTCCAGTTCTAGCTGTGAAAGCTGGGAAGGTAAATGACTTCACTGGTAAATCTATAGGAACTATTTCTGCGACACAGCTCTTTATAAACCCTGATTTTCGAGAGGCTCACATCTTGAGAGATTGGTACGAACAAGGAGGTAAGAATGCATCTTCTTTGTCTATTTCTAAAGAAATTATGCCTGGAGGATCTAAGAATGAGATGAGGAAGACTGTATCTCAAATAAAAGAGGAAGGTCTTGGAAGATCTGATAAGCCTGACTGGATCACTGTGAAGGCAACCATATCTTTTATTAAAACTGACTCATTCTGTTATACTGCTTGCCCATTGATGATTGGAGATCGACAATGCAGCAAGAAAGTAACGAGGTTAGGAGACGCAAGATGGCAATGCGATAGGTGTAATCAGGACTTTGAGGAGTGTGATTACAGATATCTTCTTCAGGCTCAAATTCAAGACCATTCAGGATTGACTTGGGTGACTGCTTTTCAGGAAGCTGGGGAAGAAATATTGGGTGTGTCCGCTAAGGAGTTATACTTGTTGAAGTATGAAGAACAGGATGACACCAAGTTTGGAGAAATAATCCAAAGCAGAATTTTCACCCAATTCATGTTTAAGCTTAAAATCAACGAGGAGATGTATTGCGATGAACAGAGGATGAAAATTACAGTAGTGAAGGCCGATAGAGTGCACTATCAATCAGAGAGCAAATACATGCTGGATTTTCGGAGACAGAAAGTTCTCTCTGACAGATATTTGCAAGTGAAGAAATCAGGGCACGGTCTCGTTTTGCAGACATGGATCATAAGTCAAGAAAGTTCAGTGGTTTTGGAGAAATCAATGGAAGCAGAAATCTTAGATGATGCGCACAATACAAAGAAACCCATAGACAACTGA 2019 40.61 MPLHLTPNSISAIIAGDVNSKPLVQVLDIKAIGNAQERYRLLISDAVSSQHAMLATQLNHSVKNGLVKKGSVVQLIEYICSPIHNRKIIMVLTMETIILDCEIIGNPKSLTAGDSTSQMLTNNNVKQSVKFSNGQLSSQRSEHNMHNFQPTVQPPYQPPPNYRNSGPMMKNEAPARIIPISALNPYQGRWAVKARVTAKGDLRRYNNARGDGKVFSFDLLDSDRGEIRVTCFNAVVDRFYELIEVGKVYLVSKGNLKPAQKNFNHLKNEWEIFLEATSTVDLCPEEDGSIPRQQFSFRPIREIENVENNTILDVIGIVISVNPSVPILRKNGMETQRRILNLKDASGRIVELTLWGEFCNREGQRLQELVDSEVFPVLAVKAGKVNDFTGKSIGTISATQLFINPDFREAHILRDWYEQGGKNASSLSISKEIMPGGSKNEMRKTVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCSKKVTRLGDARWQCDRCNQDFEECDYRYLLQAQIQDHSGLTWVTAFQEAGEEILGVSAKELYLLKYEEQDDTKFGEIIQSRIFTQFMFKLKINEEMYCDEQRMKITVVKADRVHYQSESKYMLDFRRQKVLSDRYLQVKKSGHGLVLQTWIISQESSVVLEKSMEAEILDDAHNTKKPIDN 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 37955158 37958280 + BLOR21756 Blo16g00969 72160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 443 617 IPR012340 -
Blo16g00969 672 MobiDBLite consensus disorder prediction 133 157 - -
Blo16g00969 672 Gene3D - 289 429 IPR012340 -
Blo16g00969 672 Gene3D - 176 285 IPR012340 -
Blo16g00969 672 CDD RPA1_DBD_B 311 418 - -
Blo16g00969 672 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 3 617 - -
Blo16g00969 672 CDD RPA1_DBD_C 446 615 IPR013955 -
Blo16g00969 672 Gene3D - 430 616 IPR012340 -
Blo16g00969 672 Pfam OB-fold nucleic acid binding domain 191 272 IPR004365 GO:0003676
Blo16g00969 672 CDD RPA1N 10 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo16g00969 672 Gene3D - 4 111 IPR012340 -
Blo16g00969 672 Pfam Replication factor-A C terminal domain 462 613 IPR013955 -
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 294 424 IPR012340 -
Blo16g00969 672 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo16g00969 672 Pfam Replication protein A OB domain 300 404 IPR031657 -
Blo16g00969 672 SUPERFAMILY Nucleic acid-binding proteins 176 289 IPR012340 -
Blo16g00969 672 MobiDBLite consensus disorder prediction 133 151 - -
Blo16g00969 672 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo16g00969 672 CDD RPA1_DBD_A 179 282 - -
Blo16g00969 672 PANTHER REPLICATION FACTOR A 1, RFA1 3 617 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00969 K07466 RFA1, RPA1, rpa; replication factor A1 - zju:107409151 1000.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00091 Blo-Chr3:3077096 Blo16g00969 Blo-Chr16:37955158 0 dispersed
Blo15g00339 Blo-Chr15:4088092 Blo16g00969 Blo-Chr16:37955158 2.22E-91 dispersed
Blo16g00969 Blo-Chr16:37955158 Blo06g01214 Blo-Chr6:35741905 1.45E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g104 . Blo16g00969 . Bda11g01026 . . . . . . . . . . . . . . . . . . . . Cla11g00142 Cam11g0164 Cec11g0165 Cco11g0176 Clacu11g0299 Cmu11g0152 Cre11g0650 . . . . . Csa02g00027 Chy05g01462 . . . . . . Bpe13g01237 . Bma06g00893 Sed04g0901 . . . . . . . . Bhi06g01596 Tan08g0026 Cmetu06g1804 . Hepe08g2687 . . . . . . . . . Lsi11g00167 . . Cme05g02064
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00974 . 145 882 Core DNA Replication Machinery Family AT4G14700 65.6 2.2e-283 971.8
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G14700 57.4 7.9e-217 750.7
Blo03g00974 . 80 882 Core DNA Replication Machinery Family AT4G12620 62.7 2.4e-290 995.0
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G12620 58.0 1.3e-222 770.0
Blo17g00848 . 206 531 Core DNA Replication Machinery Family AT2G37560 62.7 2.8e-123 438.7
Blo01g00744 . 1 408 Core DNA Replication Machinery Family AT2G01120 54.3 5.0e-122 434.9
Blo01g00205 . 3 527 Core DNA Replication Machinery Family AT4G29910 57.7 5.4e-172 601.3
Blo10g00449 . 1 264 Core DNA Replication Machinery Family AT1G26840 69.3 1.7e-94 342.8
Blo01g00424 . 452 676 Core DNA Replication Machinery Family AT1G26840 68.4 1.0e-78 290.4
Blo15g00779 . 1 814 Core DNA Replication Machinery Family AT1G79150 56.2 1.5e-234 809.7
Blo15g00681 . 1 539 Core DNA Replication Machinery Family AT1G79150 52.1 8.0e-132 468.4
Blo03g01396 . 1 921 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1335.5
Blo14g00834 . 48 628 Core DNA Replication Machinery Family AT5G46280 78.8 2.6e-259 891.3
Blo10g00430 . 22 836 Core DNA Replication Machinery Family AT2G16440 72.0 0.0e+00 1130.5
Blo01g00598 . 1 709 Core DNA Replication Machinery Family AT2G07690 76.8 6.9e-313 1069.7
Blo08g00626 . 137 962 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1152.9
Blo06g00534 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.8 0.0e+00 1204.9
Blo14g00089 BCT 25 548 Core DNA Replication Machinery Family AT2G29680 53.7 4.7e-143 505.0
Blo13g01051 BCT 26 524 Core DNA Replication Machinery Family AT2G29680 54.0 1.8e-142 503.1
Blo14g00089 BCT 1 518 Core DNA Replication Machinery Family AT1G07270 51.4 4.3e-130 461.8
Blo13g01051 BCT 24 493 Core DNA Replication Machinery Family AT1G07270 52.8 1.1e-128 457.2
Blo15g00359 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.4e-255 878.2
Blo06g00379 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 9.2e-255 876.3
Blo09g00553 . 22 795 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1090.1
Blo04g01396 . 6 361 Core DNA Replication Machinery Family AT2G14050 73.8 1.9e-165 579.7
Blo06g00837 . 1 964 Core DNA Replication Machinery Family AT1G77320 50.5 1.6e-259 892.9
Blo05g00261 . 853 1159 Core DNA Replication Machinery Family AT4G02110 58.1 5.6e-102 369.8
Blo10g00626 . 101 299 Core DNA Replication Machinery Family AT1G80190 70.3 2.5e-79 292.0
Blo02g00887 . 38 182 Core DNA Replication Machinery Family AT3G12530 70.3 1.8e-58 222.2
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT1G19080 65.1 1.4e-60 229.6
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT3G55490 65.1 1.4e-60 229.6
Blo04g01050 . 1 1612 Core DNA Replication Machinery Family AT5G67100 56.9 0.0e+00 1704.5
Blo06g00822 . 130 744 Core DNA Replication Machinery Family AT1G67630 55.8 1.0e-195 680.2
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo05g00533 . 4 861 Core DNA Replication Machinery Family AT5G63960 75.7 0.0e+00 1338.9
Blo07g01274 . 71 477 Core DNA Replication Machinery Family AT2G42120 68.8 1.4e-170 596.3
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo14g00223 . 3 2123 Core DNA Replication Machinery Family AT1G08260 68.5 0.0e+00 2870.5
Blo14g00223 . 9 2238 Core DNA Replication Machinery Family AT2G27120 65.4 0.0e+00 2850.5
Blo15g00024 . 19 464 Core DNA Replication Machinery Family AT5G22110 69.5 1.2e-178 623.2
Blo08g00066 . 388 1290 Core DNA Replication Machinery Family AT5G22010 66.4 4.3e-304 1040.8
Blo02g01098 . 3 355 Core DNA Replication Machinery Family AT1G63160 83.9 3.1e-167 584.7
Blo11g00085 . 1 339 Core DNA Replication Machinery Family AT5G27740 79.4 2.7e-153 538.5
Blo12g01123 . 26 352 Core DNA Replication Machinery Family AT1G21690 79.6 9.7e-145 510.0
Blo18g00180 . 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 2.9e-158 555.1
Blo16g00969 . 26 615 Core DNA Replication Machinery Family AT2G06510 68.9 1.5e-247 852.4
Blo03g00091 . 34 725 Core DNA Replication Machinery Family AT2G06510 50.5 1.3e-198 689.9
Blo06g01214 . 1 625 Core DNA Replication Machinery Family AT5G08020 67.1 1.3e-243 839.3
Blo15g00339 . 1 634 Core DNA Replication Machinery Family AT5G08020 65.7 8.5e-240 826.6
Blo06g01214 . 1 619 Core DNA Replication Machinery Family AT5G61000 66.3 1.4e-240 829.3
Blo15g00339 . 1 628 Core DNA Replication Machinery Family AT5G61000 65.8 5.2e-240 827.4
Blo03g00091 . 8 853 Core DNA Replication Machinery Family AT4G19130 51.3 4.1e-226 781.6
Blo18g00682 . 169 531 Core DNA Replication Machinery Family AT5G26680 84.0 1.0e-175 613.2
Blo13g00680 . 255 540 Core DNA Replication Machinery Family AT2G25100 68.5 3.4e-111 398.3
Blo08g00019 . 2 784 Core DNA Replication Machinery Family AT1G08130 67.2 3.6e-291 997.7
Blo08g00019 . 160 784 Core DNA Replication Machinery Family AT1G49250 65.5 3.7e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010255 1 3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00969 Blo_Chr16 FPKM 0.713599 0.444645 0.884304 0.700898 0.490596 0.0 0.544246 61.817245 62.770081 74.74987