Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00972 ATGGTGTTCTTGAAATCCGAAATCGACAAGAATCAAGGTCAAATAGGGTCCCACATGATGAGAATGTCACCCATGAGAGTCCCCCTTCCACTTGGTCTCGCCAAAGACGAGCCCATCTACGTGAATGCAAAACAATACCACGGAATCCTGAGGAGGAGACAATATCGTGCAAAGCTCGAGGCTCAAAACAAAGTCGTAAAAAATCGTAAGCCGTATCTTCACGAGTCCCGGCATGTTCACGCATTGAATCGGATCAACTGTGCGATCCCGGTTAGGCCCTCTCTCTCTATCTCTCTACAATTTCCCTTCACTTCTTTTTGTAGGTATTCAGCAATCCACTTTGCAAACATTGCAGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGCAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCCCCTGAGCTGCCGGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCTTGGTTACTTTCAGTGGCTTTCTATTTTGGTTCCAGATTTGGTTTTGATAAAACTGACAGGACACGTCTGTTCTCTATGATAAATGATCTACCCACAATATTTGAGATAGTGACTGGAAGTGAGAAGAAACAAGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGTAATAAATCTAAGTCAGGCTCAAAAGGGAGAGGCTATGAATCCGGCAATATACCAAAGGAGGTGTCCAAAGAAGAGGATGAAGAATTTGAAGAAGAAGAAGAAGGGGAGGATGACCACGGAGATACCTCATGCGGGGCTTGCGGAGAGAATTACGCATCGGACCAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGTAAGTGCGTGAAGATAACACCGGCAAGAGCCGAGCACATCAAACAATATAAGTGCCCTTCGTGCAGCAATAAGAGAGGTCGACACTGA 987 44.88 MVFLKSEIDKNQGQIGSHMMRMSPMRVPLPLGLAKDEPIYVNAKQYHGILRRRQYRAKLEAQNKVVKNRKPYLHESRHVHALNRINCAIPVRPSLSISLQFPFTSFCRYSAIHFANIAEKENLCLYGLPNEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKTDRTRLFSMINDLPTIFEIVTGSEKKQGKEKSSISNHSSNKSKSGSKGRGYESGNIPKEVSKEEDEEFEEEEEGEDDHGDTSCGACGENYASDQFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRGRH 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 37967267 37974766 - BLOR21759 Blo16g00972 72163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00972 328 MobiDBLite consensus disorder prediction 225 241 - -
Blo16g00972 328 MobiDBLite consensus disorder prediction 255 270 - -
Blo16g00972 328 CDD PHD_AL_plant 275 324 IPR044104 -
Blo16g00972 328 MobiDBLite consensus disorder prediction 219 273 - -
Blo16g00972 328 PRINTS CCAAT-binding transcription factor subunit B signature 69 92 IPR001289 GO:0003700|GO:0006355
Blo16g00972 328 PRINTS CCAAT-binding transcription factor subunit B signature 38 60 IPR001289 GO:0003700|GO:0006355
Blo16g00972 328 ProSiteProfiles Zinc finger PHD-type profile. 272 324 IPR019787 -
Blo16g00972 328 ProSiteProfiles NF-YA/HAP2 family profile. 35 97 IPR001289 GO:0003700|GO:0006355
Blo16g00972 328 Gene3D - 35 87 - -
Blo16g00972 328 ProSitePatterns NF-YA/HAP2 subunit signature. 40 60 IPR018362 GO:0003677|GO:0016602
Blo16g00972 328 Pfam PHD-finger 275 324 IPR019787 -
Blo16g00972 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 323 IPR013083 -
Blo16g00972 328 SMART cbf3 34 89 IPR001289 GO:0003700|GO:0006355
Blo16g00972 328 SMART PHD_3 274 322 IPR001965 -
Blo16g00972 328 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 118 327 - -
Blo16g00972 328 SUPERFAMILY FYVE/PHD zinc finger 263 326 IPR011011 -
Blo16g00972 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 37 85 IPR001289 GO:0003700|GO:0006355
Blo16g00972 328 PANTHER CPG BINDING PROTEIN 118 327 IPR045104 GO:0006355|GO:0042393
Blo16g00972 328 ProSitePatterns Zinc finger PHD-type signature. 275 321 IPR019786 -
Blo16g00972 328 Pfam Alfin 119 213 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00448 Blo-Chr14:5297558 Blo16g00972 Blo-Chr16:37967267 8.77E-21 dispersed
Blo16g00972 Blo-Chr16:37967267 Blo17g00276 Blo-Chr17:2903439 1.11E-96 dispersed
Blo01g00565 Blo-Chr1:6216102 Blo16g00972 Blo-Chr16:37967267 4.02E-103 wgd
Blo14g00563 Blo-Chr14:8484159 Blo16g00972 Blo-Chr16:37967267 2.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13446 PF12165 Alfin 1.40E-49 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00972 - - zju:107424111 328.176