Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00976 ATGGGCGACGAAAGAGGTGCGATTGTAGCCGACGATGACGATATTATCCAACAGAGACGAGTTGTAAGCATATATCCTCTAAGCAGCTACTTTTTCGGATCGAAGGAGCCGATTTCCATTAAGGACCAAACCTTGGACGAACGCATTCAGAGACTGAAAACCAATTATGCTGCTTACGGATTGAGGACTTGCGTGGAAGCAGTTATTCTGCTGACTGGAAACGCTACTGAAGCATCTAAAAATCTGTATGTAAGAGATCATTCTCTGTTTATGTGGGAATTTCAGGTGGAGCTGTTCAAACATCCTCATCTATTGCTGCTGCAAGTAAGAAATTCCGTTTTTAAGCTACCAGGTGGTCGCTTAAGACCAAATGAATCTGATGTCGAGGGATTGAAACGTAAGTTATCGAGGAAGCTTTCCAGCGATGAAAATTCTGACGGATCCGATTGGGAGGTGGGAGAATGCATTGGAATGTGGTGGAGATCTGACTTTGAAACATTATTGTATCCATACTTGCCACCTTCATTAAAAGAGCCTAAGGAATGCGCTAAGATTTTTCTCGTTAACTTACCCGCCAGTCGAAAATTCATCGTGCCGAAAAACTTCAAATTGTTGGCCGTTCCATTACACCAGATTCGCGACAATCCAGAGTCTTCCTCTTCCTCCTTCCGTCCATTTTTCTTCCAAGCCTTCACGCAACTCTACCTGAAGAGTTCGTCGGAGAAAAGGAGATCCGTCCGGCCGATGGATCCCGACCTCAACCTCACTCTCCCTCCTCCCAACGGAAAGGAGTCTGATGAATCGGAAAATTTGGAGACTGAAACCGGCGAGAGTATCGTCCAATCGACGAACCTCAACCTCAAACTCACTCTCCCTATTTCCGATGAGGCTTCATTGGCCACTTTTTTAACTAGTAGTGGTACATTCATGGACGGTGATCTTATCATCAATCGGAAGGGAATTCAAATTGTCTGTCAGACTCAGAAAGAAGCTGAAAATCCTGATCAACTCAACCCCTCAGACAGCCAGTGGAGTTTGGATGACTTGGATACAGTTAAAGTCATCGGAAAAGGAAACAGCGGAGTTGTTCAGTTGGTGAAACACAAACCCACCGACCAGTTTTTCGCATTGAAGGTTATTCAAATGAAGCTCGACGAGTGTCATCGGAAACAGATAGCGAGGGAATTGAAGATTAATCAGTCAGCTCGAAGCCCGTATGTGGTGGTCTGCTATCAGTCTTTCTACTACAATGGATCCATTTCAATTATGTTAGAGTATATGGATGGAGGGAGTCTGGCAGATTTTCTCAAACAAGTTAAGTCGATTCCTGAGGAATATCTTGCTGCAATTTGCAAACAGGTGCTGAGGGGACTTTTGTACCTTCACCATGAAATGCACATAATTCACAGGGACTTGAAGCCTTCAAATCTGCTAATAAATCACAAAGGAGAAGTCAAGATTGGTGATTTTGGTGTGAGCAGAATAATGGCCAGCACCTCTGGACAGGCAAATACCTTTGTTGGAACATGCACCTACATGTCTCCAGAGAGGATTGGTGGAGAAAGATATGACAAGAAAAGTGATATTTGGAGCTTGGGACTGGTTTTACTGGAGTGTGCAATTGGTCAGTTTCCTTATCCTCCACCAGAGGAAGGTGGAAGATGGGAATTCTTTGATATTATGCAAATCATTACAAATGGACCTCCTCCTTCTGCTCCTTCTCACAGATTTTCTCCACAGTTCTGCTCGTTCATTTCCGCATGGTGA 1767 44.14 MGDERGAIVADDDDIIQQRRVVSIYPLSSYFFGSKEPISIKDQTLDERIQRLKTNYAAYGLRTCVEAVILLTGNATEASKNLYVRDHSLFMWEFQVELFKHPHLLLLQVRNSVFKLPGGRLRPNESDVEGLKRKLSRKLSSDENSDGSDWEVGECIGMWWRSDFETLLYPYLPPSLKEPKECAKIFLVNLPASRKFIVPKNFKLLAVPLHQIRDNPESSSSSFRPFFFQAFTQLYLKSSSEKRRSVRPMDPDLNLTLPPPNGKESDESENLETETGESIVQSTNLNLKLTLPISDEASLATFLTSSGTFMDGDLIINRKGIQIVCQTQKEAENPDQLNPSDSQWSLDDLDTVKVIGKGNSGVVQLVKHKPTDQFFALKVIQMKLDECHRKQIARELKINQSARSPYVVVCYQSFYYNGSISIMLEYMDGGSLADFLKQVKSIPEEYLAAICKQVLRGLLYLHHEMHIIHRDLKPSNLLINHKGEVKIGDFGVSRIMASTSGQANTFVGTCTYMSPERIGGERYDKKSDIWSLGLVLLECAIGQFPYPPPEEGGRWEFFDIMQIITNGPPPSAPSHRFSPQFCSFISAW 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 38023577 38029365 + BLOR21763 Blo16g00976 72167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00976 588 Gene3D Transferase(Phosphotransferase) domain 1 429 588 - -
Blo16g00976 588 PANTHER MAP KINASE KINASE 282 587 - -
Blo16g00976 588 Pfam Protein kinase domain 351 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00976 588 MobiDBLite consensus disorder prediction 242 278 - -
Blo16g00976 588 Gene3D Phosphorylase Kinase; domain 1 319 428 - -
Blo16g00976 588 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 282 587 - -
Blo16g00976 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Blo16g00976 588 ProSiteProfiles Protein kinase domain profile. 349 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00976 588 SMART serkin_6 349 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00976 588 CDD PKc_MAPKK_plant_like 347 587 - -
Blo16g00976 588 SUPERFAMILY Protein kinase-like (PK-like) 340 586 IPR011009 -
Blo16g00976 588 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 20 76 - -
Blo16g00976 588 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 94 224 - -
Blo16g00976 588 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Blo16g00976 588 Pfam Nucleotide hydrolase 96 218 IPR016706 GO:0003729|GO:0005849|GO:0006378
Blo16g00976 588 Pfam Nucleotide hydrolase 21 72 IPR016706 GO:0003729|GO:0005849|GO:0006378
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00976 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - cit:102625262 451.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo14g00559 Blo16g00976 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00264 Blo-Chr13:12400561 Blo16g00976 Blo-Chr16:38023577 1.52E-58 dispersed
Blo16g00976 Blo-Chr16:38023577 Blo01g00457 Blo-Chr1:5066223 1.48E-32 dispersed
Blo07g00414 Blo-Chr7:7749000 Blo16g00976 Blo-Chr16:38023577 3.23E-58 transposed
Blo14g00559 Blo-Chr14:8397327 Blo16g00976 Blo-Chr16:38023577 3.29E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo14g00559 CCT 35 361 MAP Kinase Kinase Gene Family AT4G26070 68.8 6.2e-131 464.2
Blo16g00976 CCT 304 586 MAP Kinase Kinase Gene Family AT4G26070 63.4 6.7e-101 364.4
Blo01g00529 . 94 379 MAP Kinase Kinase Gene Family AT4G26070 58.8 1.6e-97 353.2
Blo14g00559 CCT 35 335 MAP Kinase Kinase Gene Family AT4G29810 71.8 1.1e-127 453.4
Blo16g00976 CCT 286 586 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.6e-107 386.3
Blo01g00529 . 89 353 MAP Kinase Kinase Gene Family AT4G29810 61.9 6.5e-96 347.8
Blo13g00264 . 50 522 MAP Kinase Kinase Gene Family AT5G40440 77.6 2.3e-222 768.5
Blo01g00529 . 87 383 MAP Kinase Kinase Gene Family AT5G56580 83.8 3.9e-144 508.1
Blo14g00559 CCT 29 350 MAP Kinase Kinase Gene Family AT5G56580 59.4 5.7e-111 397.9
Blo16g00976 CCT 280 587 MAP Kinase Kinase Gene Family AT5G56580 57.4 5.2e-96 348.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001250 4 2 3 6 3 1 4 1 1 2 1 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 3 3 3 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84765 PF00069 Pkinase 5.10E-61 CL0016 Blo PK