Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00977 ATGAGCGACCCCGGTGGCGATTCAGCTGCAGCAGTTAAGACAGTTATGGTGGCAGTTAACGGCGTCCCCGGTCGTAGCAGTGGCGGCGCAAGCCGACGCGCGGTCCAATGGACCGTCAAGAATCTCTTGCCCGGTGCGGATCGTCTCCTCTTAGTTCATGTCATGCCCAAAATTACTTCGATTCCCACTCCATTGGGAGATAGAGTCCCCGTTTCGGCTCTTGATGCGAACGTGGTTGCTCGTTATACGCACGACATGAAAGAGAAATTCGATCAAATTTTTGTCCCGTCTGAGAAGCTTTGCAGGAACAAGAAAGTTGAAACTCTAGTGCTAGAAGATGACAACCCAGCTACAGCGCTTGTAAGATATATATCCGAGTTTGATATCAAAACATTGGTGTTGGGTTCTTGTTCTTCAAATTTCATGACAAGGAAGCTTAAAGGACCTGAAGTACCAACAACAGTTCTGAGAAATGCTCCTAATAGTTGTAATATCTTCATCATATCAAAGCATAGAATCATTAAAAGAACAAGAAGTTCCTCGCCAACCAGTGAGACTGATTCTCGGCAGTGCATACCAAGTGAAAGTAATTATGGCGTAGGTGCTGATCAGCTATATTCTTCATCTGTGGAATCAGAAGGCAGTTACAGAAATGTATATTCAGAAATGATTCATGATGACTTGGAAAACAAACGTGAGATTGATTCAAGTAAATTAGATTTCGCAGCCTCTGAAACTGAGCAGGTAGATGTGCACCGTGAGATTGAGTCACTGCAGCTAGATTTAGCAAACACTGTTGCCATGTATAAACGTGCTTGTGAAGAACTGGTCCATACCCAGACTAAGATTCAATCACTTTCCTCTGAATACCATGAAGAAACAAGGAGAGTGAAAGCTGCCATGGAAAGAGACAAAGATTTGAGGAAAATTGCAGCTGAAGAAACAGATAAGCATTTAGAAGCCATGAAGGCACTAGAGGAAGCAAAAGCTTTACTGGCTAAAGAGGCATATGAAAGGCAGATGGCCGAACAGAATGCCCAAAAAGTATCCTTGGAAAAGCAAAGAATTGTTGATGCTCTAATCTCTTCTGATAAAAGGTACAGAAGGTATACTGGGGAGGAAATAGAAATCGCAACGGATTTCTTTAGCGAGAGTAATGTGATTGGTCAGGGAGGATATGGGAAGGTTTATAAATGCTATCTTGATGGTACACTAGTGGCTGTTAAGGTTATTCAACCTGGTGATTTTGACAAGAAAAATGAGTTTCTGAAAGAGGTTGAAGTTTTAAGCCAAATACGCCATCCACACTTGGTTTTACTCCTCGGAGCTTGTCCGGAGAGAGGCTGTCTGGTTTATGAATACTTGGAAAATGGAAGTCTGGACGAGTATATCTTGCATAAGAGGAGGAAACCACCACTTCCATGGCTTGTTAGGTTCAGGATAATTCATCAAGTAGCGTGTGGACTTTCATTCTTACACAACTCAAAGCCGGAACCTATAATACATCGAGATCTAAAGCCGGGCAATATTTTGTTGGACAGAAACTATGTTGGCAAAATTGCAGATGTTGGACTGGCTAAAATCACTGGAGAGATAGTGCCTGATAATATAACAGAATATGAAACTTCTATTCTATTTGGTACACTTCAATACATGGACCCTGAGTATCTGAGAACTGGCACAGTTCGTCCAAAATCCGATTTATATGCTTTTGGTATAATAATTCTCCAAATGCTGACAGCCCGTCATCCTCACAGCTTACTTTCAGCAGTAGAGAATGCTATTTCAAATGGGTCCTTGGCAGATATTTTAGACAAGTCAGTTCCAGATTGGCCTCTTTCTCAAACAGAAGAATTGGCTAAAACTGCATTGAAATGCACAAAGCTAAGATGCAGGGATCGGCCTGATTTGGATGCAGAGGTTATGCCCATCCTCAATACAGTTTTGGACGCTGCAGAGTTAAGTCAGAAAATTCTAAGCAACTCTGCATATTTCCCAAGCCACTACCTCTGTCCAATCCTTCAGGATATAATGGAGGAGCCACACATCGCTGCTGACGGGTTTACGTACGAATACGAAGCGATTAAGGTGTGGCTGGATAGACATGAGGTATCACCAGTGACAAAGCTTAGACTTGAGCATTCTATGGTAACACCAAATCACACTTTAAGATCTGCCATACAAGAATGGAGGTCATCTTTGAAACTTCCCTACACTCAGTTTGGATAA 2229 42.35 MSDPGGDSAAAVKTVMVAVNGVPGRSSGGASRRAVQWTVKNLLPGADRLLLVHVMPKITSIPTPLGDRVPVSALDANVVARYTHDMKEKFDQIFVPSEKLCRNKKVETLVLEDDNPATALVRYISEFDIKTLVLGSCSSNFMTRKLKGPEVPTTVLRNAPNSCNIFIISKHRIIKRTRSSSPTSETDSRQCIPSESNYGVGADQLYSSSVESEGSYRNVYSEMIHDDLENKREIDSSKLDFAASETEQVDVHREIESLQLDLANTVAMYKRACEELVHTQTKIQSLSSEYHEETRRVKAAMERDKDLRKIAAEETDKHLEAMKALEEAKALLAKEAYERQMAEQNAQKVSLEKQRIVDALISSDKRYRRYTGEEIEIATDFFSESNVIGQGGYGKVYKCYLDGTLVAVKVIQPGDFDKKNEFLKEVEVLSQIRHPHLVLLLGACPERGCLVYEYLENGSLDEYILHKRRKPPLPWLVRFRIIHQVACGLSFLHNSKPEPIIHRDLKPGNILLDRNYVGKIADVGLAKITGEIVPDNITEYETSILFGTLQYMDPEYLRTGTVRPKSDLYAFGIIILQMLTARHPHSLLSAVENAISNGSLADILDKSVPDWPLSQTEELAKTALKCTKLRCRDRPDLDAEVMPILNTVLDAAELSQKILSNSAYFPSHYLCPILQDIMEEPHIAADGFTYEYEAIKVWLDRHEVSPVTKLRLEHSMVTPNHTLRSAIQEWRSSLKLPYTQFG 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 38034996 38039327 - BLOR21764 Blo16g00977 72168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00977 742 SMART Ubox_2 668 730 IPR003613 GO:0004842|GO:0016567
Blo16g00977 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 160 - -
Blo16g00977 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 14 198 - -
Blo16g00977 742 Gene3D HUPs 11 179 IPR014729 -
Blo16g00977 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 222 733 - -
Blo16g00977 742 ProSitePatterns Protein kinases ATP-binding region signature. 388 409 IPR017441 GO:0005524
Blo16g00977 742 ProSiteProfiles Protein kinase domain profile. 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00977 742 CDD STK_N 14 171 - -
Blo16g00977 742 Pfam Universal stress protein family 14 162 IPR006016 -
Blo16g00977 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Blo16g00977 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 736 IPR013083 -
Blo16g00977 742 Gene3D Phosphorylase Kinase; domain 1 353 454 - -
Blo16g00977 742 PANTHER OS02G0152300 PROTEIN 222 733 - -
Blo16g00977 742 PANTHER OS02G0152300 PROTEIN 14 198 - -
Blo16g00977 742 Coils Coil 325 354 - -
Blo16g00977 742 Pfam Protein kinase domain 383 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00977 742 ProSiteProfiles U-box domain profile. 664 737 IPR003613 GO:0004842|GO:0016567
Blo16g00977 742 SUPERFAMILY RING/U-box 663 735 - -
Blo16g00977 742 Gene3D Transferase(Phosphotransferase) domain 1 455 663 - -
Blo16g00977 742 Coils Coil 283 303 - -
Blo16g00977 742 SMART serkin_6 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo16g00977 742 SUPERFAMILY Protein kinase-like (PK-like) 365 637 IPR011009 -
Blo16g00977 742 CDD RING-Ubox_WDSUB1_like 669 709 - -
Blo16g00977 742 Pfam U-box domain 666 732 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00977 - - - cpep:111805862 903.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo14g00710 Blo16g00977 CCT
Blo08g00440 Blo16g00977 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00977 Blo-Chr16:38034996 Blo17g00048 Blo-Chr17:307230 2.01E-08 dispersed
Blo06g00058 Blo-Chr6:1548740 Blo16g00977 Blo-Chr16:38034996 2.43E-63 transposed
Blo13g01077 Blo-Chr13:32924627 Blo16g00977 Blo-Chr16:38034996 3.66E-112 transposed
Blo15g00114 Blo-Chr15:948612 Blo16g00977 Blo-Chr16:38034996 4.78E-134 transposed
Blo16g00581 Blo-Chr16:24005808 Blo16g00977 Blo-Chr16:38034996 9.14E-99 transposed
Blo16g00977 Blo-Chr16:38034996 Blo08g00440 Blo-Chr8:8891919 2.08E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g145 . Blo16g00977 Bda01g01340 Bda11g01037 . . . . . . Cma05g01403 Cma12g00651 Car05g01319 Car12g00600 . . . . . . . . . . Cla11g00152 . . . . . . . . . . . Csa02g00037 Chy05g01451 . . . . . . Bpe13g01247 . Bma06g00882 . Cmo05g01403 Cmo12g00590 . . . . Cpe11g01178 . Bhi06g01630 . . . . . . . . . . . . . Lsi11g00178 . . Cme05g02054
Vvi11g818 . Blo16g00977 . . Bpe01g00726 . Bma07g00657 Bma11g00781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo08g00440 Blo14g00710 . . . Bpe13g01247 . . . Cmo05g00773 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00977 CCT 9 736 Plant U-box Gene Family AT5G57035 51.4 8.8e-213 737.3
Blo13g00821 . 199 433 Plant U-box Gene Family AT5G05230 56.5 8.8e-67 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84766 PF00069 Pkinase 1.90E-41 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00977 Blo_Chr16 FPKM 7.908377 7.785583 6.948752 6.780513 8.886471 11.697673 9.338805 9.095933 10.055377 11.154388