Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01002 ATGTCTTGGCAAACATATGTCGATGAACATCTGATGTGCGACATCGAAGGAAATCAACTCACTGCAGCTGCAATCATCGGCCATGACGGGAGCGTTTGGGCCCAGAGCTCCACCTTCCCTCAGTTGAAGTCTGAAGAAATAAGTGGGATTATGACTGACTTTGCTGAGCCTGGAACACTAGCTCCAACTGGCTTGTACCTCGGAGGGGCAAAATATATGGTGATCCAAGGCGAGCCTGGAGCTGTCATACGTGGGAAGAAGGGCCCTGGTGGTGTTACAGTTAAAAAGACAGGTTTGGCCTTGATCATTGGTATATATGATGAGCCAATGACTCCTGGTCAATGCAACATGATTGTCGAAAGGCTTGGAGACTATATCATCGAGCAGAATCTCTAG 396 47.98 MSWQTYVDEHLMCDIEGNQLTAAAIIGHDGSVWAQSSTFPQLKSEEISGIMTDFAEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALIIGIYDEPMTPGQCNMIVERLGDYIIEQNL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 38385098 38387097 + BLOR21789 Blo16g01002 72193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01002 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Blo16g01002 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Blo16g01002 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Blo16g01002 131 CDD PROF 2 130 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Blo16g01002 131 PANTHER PROFILIN 1 130 - -
Blo16g01002 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Blo16g01002 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Blo16g01002 131 SMART prof_2 1 131 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01002 K05759 PFN; profilin - qsu:111995052 234.572
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo14g00527 Blo16g01002 CCT
Blo14g00527 Blo16g01002 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00529 Blo-Chr1:5842737 Blo16g01002 Blo-Chr16:38385098 1.05E-54 wgd
Blo14g00527 Blo-Chr14:7522515 Blo16g01002 Blo-Chr16:38385098 1.87E-66 wgd
Blo16g01002 Blo-Chr16:38385098 Blo08g00324 Blo-Chr8:4882509 1.61E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g252 . Blo16g01002 Bda01g02037 Bda11g01079 . . . Bma11g00546 . . Cma05g01374 . Car05g01288 . . . . . . . . . . . Cla11g00182 Cam11g0212 Cec11g0213 Cco11g0226 Clacu11g0347 Cmu11g0197 Cre11g0695 . . Cone4ag0755 . . Csa02g00080 Chy05g01409 . . Blo14g00527 . Bda09g01121 . Bpe13g01272 Bma01g00212 Bma06g00836 Sed11g0036 Cmo05g01377 Cmo12g01309 . . . . Cpe11g01144 Cpe07g01035 Bhi06g01687 Tan08g0108 Cmetu05g1709 . . . . . . . . . . . Lsi11g00217 . . Cme05g02013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.5e-215 743.8
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.8e-214 740.7
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.0e-214 740.3
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 8.5e-214 739.6
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 8.5e-214 739.6
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.9e-213 738.4
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.9e-213 738.4
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT2G37620 93.8 1.0e-203 706.1
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT2G37620 95.5 2.0e-199 691.8
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT2G37620 79.8 2.9e-161 565.1
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT2G37620 65.5 2.9e-129 458.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT5G59370 96.0 2.5e-213 738.0
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 3.2e-213 737.6
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.1
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.1e-212 734.9
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.3e-211 731.5
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT5G59370 95.0 5.2e-211 730.3
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.0
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.0
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT5G59370 93.8 1.5e-202 702.2
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT5G59370 95.5 7.7e-199 689.9
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT5G59370 80.9 4.0e-163 571.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT5G59370 65.3 1.2e-127 453.4
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G46520 96.3 1.1e-213 739.2
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.5e-213 738.8
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 737.3
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 9.4e-213 736.1
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 1.0e-211 732.6
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G46520 95.2 2.3e-211 731.5
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.1e-210 729.2
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.1e-210 729.2
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G46520 94.1 6.8e-203 703.4
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G46520 95.8 3.5e-199 691.0
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G46520 81.2 1.8e-163 572.4
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G46520 65.5 5.5e-128 454.5
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G12110 97.1 1.5e-215 745.3
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.5e-215 745.3
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 2.0e-215 745.0
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 741.9
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 1.5e-213 738.8
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 3.2e-213 737.6
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 7.2e-213 736.5
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 7.2e-213 736.5
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G12110 93.8 8.0e-204 706.4
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G12110 96.6 4.8e-201 697.2
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G12110 81.2 1.1e-163 573.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G12110 66.6 1.2e-130 463.4
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 6.3e-209 723.4
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 6.3e-209 723.4
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 8.2e-209 723.0
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G18780 91.8 5.3e-208 720.3
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G18780 91.5 1.6e-207 718.8
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G18780 90.3 2.2e-198 688.3
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G18780 92.2 5.2e-195 677.2
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G18780 77.4 7.8e-159 557.0
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G18780 62.1 1.3e-124 443.4
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.2e-209 724.9
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.2e-209 724.9
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.8e-209 724.5
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.2e-209 723.0
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.8e-208 721.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT1G49240 91.8 5.3e-208 720.3
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT1G49240 90.3 2.2e-198 688.3
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT1G49240 92.4 1.8e-195 678.7
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT1G49240 77.7 2.7e-159 558.5
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT1G49240 62.3 4.3e-125 444.9
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT5G09810 98.9 1.3e-217 752.3
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.8e-217 751.1
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 6.3e-217 750.0
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 6.3e-217 750.0
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT5G09810 96.6 3.8e-214 740.7
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 8.5e-214 739.6
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.5e-213 738.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT5G09810 94.1 1.4e-203 705.7
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT5G09810 96.1 5.4e-200 693.7
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT5G09810 80.4 1.3e-161 566.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT5G09810 65.8 1.7e-129 459.5
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 2.3e-57 218.4
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT2G19760 73.8 8.8e-49 189.9
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 75.6 3.7e-55 211.1
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT4G29350 74.6 6.7e-49 190.3
Blo16g01002 CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.9e-37 151.4
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 73.9 1.2e-56 216.1
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT4G29340 77.0 5.4e-54 207.2
Blo08g00324 . 58 146 Cytoskeleton Gene Families AT4G29340 80.9 6.4e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01002 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0