Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01002 ATGTCTTGGCAAACATATGTCGATGAACATCTGATGTGCGACATCGAAGGAAATCAACTCACTGCAGCTGCAATCATCGGCCATGACGGGAGCGTTTGGGCCCAGAGCTCCACCTTCCCTCAGTTGAAGTCTGAAGAAATAAGTGGGATTATGACTGACTTTGCTGAGCCTGGAACACTAGCTCCAACTGGCTTGTACCTCGGAGGGGCAAAATATATGGTGATCCAAGGCGAGCCTGGAGCTGTCATACGTGGGAAGAAGGGCCCTGGTGGTGTTACAGTTAAAAAGACAGGTTTGGCCTTGATCATTGGTATATATGATGAGCCAATGACTCCTGGTCAATGCAACATGATTGTCGAAAGGCTTGGAGACTATATCATCGAGCAGAATCTCTAG 396 47.98 MSWQTYVDEHLMCDIEGNQLTAAAIIGHDGSVWAQSSTFPQLKSEEISGIMTDFAEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALIIGIYDEPMTPGQCNMIVERLGDYIIEQNL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 38385098 38387097 + BLOR21789 Blo16g01002 72193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01002 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Blo16g01002 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Blo16g01002 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Blo16g01002 131 CDD PROF 2 130 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Blo16g01002 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Blo16g01002 131 PANTHER PROFILIN 1 130 - -
Blo16g01002 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Blo16g01002 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Blo16g01002 131 SMART prof_2 1 131 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo14g00527 Blo16g01002 CCT
Blo14g00527 Blo16g01002 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00529 Blo-Chr1:5842737 Blo16g01002 Blo-Chr16:38385098 1.05E-54 wgd
Blo14g00527 Blo-Chr14:7522515 Blo16g01002 Blo-Chr16:38385098 1.87E-66 wgd
Blo16g01002 Blo-Chr16:38385098 Blo08g00324 Blo-Chr8:4882509 1.61E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01002 K05759 - qsu:111995052 234.572