Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01019 ATGGCTGACTCGTTCAACTCGTCTTCCTCACCTAGCTCTTCTTCTTCGCCCGGACCCGACCCGAAGAAGGGTAAGCGAGCCCGGGAAAGTAACAGCAAACACCCGGTTTACAGAGGGGTCCGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATCCGGGAACCGAGAAAGAAGAACCGGATTTGGCTCGGAACCTTCTCCACGCCAGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTTTGACAATCAAAGGCAAATCCGCCGTCCTCAACTTCCCGGCACTTGCTGGAATACTTCCCCAACCGGCTTCGAACTCTCCCCGCGACGTTCAAGCCGCCGCTGCCTTGGCCGCTTCGATGGAGGTTCTTCCGGCGACTCCACCAGAATCCTCACCACCTCCGCCGTCTGAACAATCATCCTCTTCCTTCCCATTCGACATTCCTTCCCCGGAGGAACTCAGCGCGATCGTAGAACTTCCGAGCTTAGGAACCAGCTACGAATCACCCGGGTCAGACTTCGTGTTTCTAGACTCCGAAGACCGGTGGCTCTACGCAGAGGATTACGAATACTTCACGGATCAGATATGA 588 56.29 MADSFNSSSSPSSSSSPGPDPKKGKRARESNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFSTPEMAARAHDVAALTIKGKSAVLNFPALAGILPQPASNSPRDVQAAAALAASMEVLPATPPESSPPPPSEQSSSSFPFDIPSPEELSAIVELPSLGTSYESPGSDFVFLDSEDRWLYAEDYEYFTDQI 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 38553246 38553833 - BLOR21806 Blo16g01019 72210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01019 195 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 187 - -
Blo16g01019 195 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Blo16g01019 195 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Blo16g01019 195 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Blo16g01019 195 MobiDBLite consensus disorder prediction 21 36 - -
Blo16g01019 195 MobiDBLite consensus disorder prediction 121 148 - -
Blo16g01019 195 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Blo16g01019 195 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Blo16g01019 195 MobiDBLite consensus disorder prediction 1 19 - -
Blo16g01019 195 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Blo16g01019 195 MobiDBLite consensus disorder prediction 1 36 - -
Blo16g01019 195 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Blo16g01019 195 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Blo16g01019 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01028 Blo-Chr2:39982096 Blo16g01019 Blo-Chr16:38553246 5.36E-38 dispersed
Blo12g00754 Blo-Chr12:25896657 Blo16g01019 Blo-Chr16:38553246 9.72E-56 dispersed
Blo16g01019 Blo-Chr16:38553246 Blo17g00070 Blo-Chr17:534712 2.10E-56 dispersed
Blo01g00519 Blo-Chr1:5705740 Blo16g01019 Blo-Chr16:38553246 2.01E-86 wgd
Blo16g01019 Blo-Chr16:38553246 Blo08g00315 Blo-Chr8:4539119 1.07E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13449 PF00847 AP2 1.20E-13 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01019 K09286 - tcc:18588535 228.024