Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo16g01019 | ATGGCTGACTCGTTCAACTCGTCTTCCTCACCTAGCTCTTCTTCTTCGCCCGGACCCGACCCGAAGAAGGGTAAGCGAGCCCGGGAAAGTAACAGCAAACACCCGGTTTACAGAGGGGTCCGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATCCGGGAACCGAGAAAGAAGAACCGGATTTGGCTCGGAACCTTCTCCACGCCAGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTTTGACAATCAAAGGCAAATCCGCCGTCCTCAACTTCCCGGCACTTGCTGGAATACTTCCCCAACCGGCTTCGAACTCTCCCCGCGACGTTCAAGCCGCCGCTGCCTTGGCCGCTTCGATGGAGGTTCTTCCGGCGACTCCACCAGAATCCTCACCACCTCCGCCGTCTGAACAATCATCCTCTTCCTTCCCATTCGACATTCCTTCCCCGGAGGAACTCAGCGCGATCGTAGAACTTCCGAGCTTAGGAACCAGCTACGAATCACCCGGGTCAGACTTCGTGTTTCTAGACTCCGAAGACCGGTGGCTCTACGCAGAGGATTACGAATACTTCACGGATCAGATATGA | 588 | 56.29 | MADSFNSSSSPSSSSSPGPDPKKGKRARESNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFSTPEMAARAHDVAALTIKGKSAVLNFPALAGILPQPASNSPRDVQAAAALAASMEVLPATPPESSPPPPSEQSSSSFPFDIPSPEELSAIVELPSLGTSYESPGSDFVFLDSEDRWLYAEDYEYFTDQI | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 38553246 | 38553833 | - | BLOR21806 | Blo16g01019 | 72210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo16g01019 | 195 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 6 | 187 | - | - | |
Blo16g01019 | 195 | Pfam | AP2 domain | 35 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g01019 | 195 | SUPERFAMILY | DNA-binding domain | 36 | 94 | IPR016177 | GO:0003677 | |
Blo16g01019 | 195 | SMART | rav1_2 | 36 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g01019 | 195 | MobiDBLite | consensus disorder prediction | 21 | 36 | - | - | |
Blo16g01019 | 195 | MobiDBLite | consensus disorder prediction | 121 | 148 | - | - | |
Blo16g01019 | 195 | CDD | AP2 | 37 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g01019 | 195 | ProSiteProfiles | AP2/ERF domain profile. | 36 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g01019 | 195 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Blo16g01019 | 195 | Gene3D | AP2/ERF domain | 36 | 94 | IPR036955 | GO:0003700|GO:0006355 | |
Blo16g01019 | 195 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Blo16g01019 | 195 | PRINTS | Ethylene responsive element binding protein signature | 37 | 48 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g01019 | 195 | PRINTS | Ethylene responsive element binding protein signature | 59 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Blo16g01019 | 195 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 6 | 187 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo02g01028 | Blo-Chr2:39982096 | Blo16g01019 | Blo-Chr16:38553246 | 5.36E-38 | dispersed | |
Blo12g00754 | Blo-Chr12:25896657 | Blo16g01019 | Blo-Chr16:38553246 | 9.72E-56 | dispersed | |
Blo16g01019 | Blo-Chr16:38553246 | Blo17g00070 | Blo-Chr17:534712 | 2.10E-56 | dispersed | |
Blo01g00519 | Blo-Chr1:5705740 | Blo16g01019 | Blo-Chr16:38553246 | 2.01E-86 | wgd | |
Blo16g01019 | Blo-Chr16:38553246 | Blo08g00315 | Blo-Chr8:4539119 | 1.07E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13449 | PF00847 | AP2 | 1.20E-13 | CL0081 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo16g01019 | K09286 | - | tcc:18588535 | 228.024 |