Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01025 ATGGGGGAAGGAGAGGCGGGTGATTCTGTTCCAGAAAATTATCAGCCAGATGTTGCGGCATCAAGTGACGCTGCTTCGTCAGATATCCCAGCTAAGAAGCTCGCGAGGCAGCTGGATTTTACGGGCATTGGAAGGATGTCAGCGAGTGTGGTCTTGCCGGAACATCCCCACTCTCAATCTCAAACACAATTGCAGTCGCGCTCTCAGTTGCCAGCTGTAGCAATGCCTCAGAGCCAGGCTCAATTGCCACCGCCGCCTCAGTCACAGCCACAAATGGTGGTTATACCCGTATCTCCATCTCCAAGGGTTGCAAAACCAGATTCCCCAAAGTCAAGAGCAAGATCCAACATCGAAGCAAAAGATTGTACTCCGAAGAAGCAAAAACAGTGTAATTGTAAACACTCTCGCTGCTTAAAGTTGTATTGTGAGTGCTTTGCATCTGGAATATACTGCGATGGTTGTAACTGCATAAACTGCTATAATAATGTTGAAAATGAAGCTGCCAGGCGCGAAGCAGTTGAATCCATTTTGGAACGTAATCCAAATGCATTTCGACCAAAAATTGCTAGCAGTCCGCATGGGACACGTGATAATAGGGAGGAGGCTGGGGAGGTTCTAATGTTGGGAAAGCACAACAAAGGCTGCCATTGCAAGAAATCAGGGTGCCTAAAAAAGTATTGTGAGTGTTTCCAGGCCAATATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAAAACTTTGAGGAAAGTGAAGAGAGGCAAGCTCTATTCCATGGGGACCATGGGAACAATATTGCATACATACAGCAGGCAGCTAATGCTGCTATAACTGGAGCTATTGGATCCTCTGGATATGCATCAACTCCAGTGTCAAGGAAAAGAAAAGGACAAGAGCTTCTTTTTGGCCACACACCCAAAGATCCAGCCATTCATCGGCTAGCACAATTTCAACAGGAAAATCAAATTAGAACTTCTACAGCTTCCTTTCCTTCAATCCCTGCTACTCGTGCAGGTTCCAATGCAGCATTGGGCCCTTCAAAGTTCACTTACAGATCGTTGTTAGCAGACATCATCCAACCACAGGATTTGAAGGAGCTTTGCTCTGTGTTAGTCGTTCTATCTAGTGAAACTGCCAAGACACTTGCAGATCAAAGGAATGCTGCAGAAAGAGGGGCCGACTATCAAATAGAAACTTCCCTTGCTTCCTCAACTCATGACAGGCTGCAGAATGAAAAGGATTCTGCTGAGAAAGCTATCAATGGTGATTGTTCAAGCGCAAACCAGGATAATATAATCAACCCCGACAATTCCAATTCAGAAGAAGCGAATGTACCAAAAGGCCGGCCTATGTCTCCCGGAACTTTAGCTTTGATGTGCGATGAAAAAGACACAATGTTTATAGAATCTGCTTCCCCCAATGGGATAGTTGGCAATAGCTGCTCTACATCATCACAAATGCCTTACGAACAAGATCTGTTGGAAGTCTACGCCGAACAGGAACAGATTGTCTTGACAAAGTTTCGAGATTGTCTCGACAGGCTCATAACTTTCGGAAAGATAAAAGGCAAGTTAATCATTTCTGATCTTGATAAATTAACTATTGAACTTTAG 1614 44.55 MGEGEAGDSVPENYQPDVAASSDAASSDIPAKKLARQLDFTGIGRMSASVVLPEHPHSQSQTQLQSRSQLPAVAMPQSQAQLPPPPQSQPQMVVIPVSPSPRVAKPDSPKSRARSNIEAKDCTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVESILERNPNAFRPKIASSPHGTRDNREEAGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEESEERQALFHGDHGNNIAYIQQAANAAITGAIGSSGYASTPVSRKRKGQELLFGHTPKDPAIHRLAQFQQENQIRTSTASFPSIPATRAGSNAALGPSKFTYRSLLADIIQPQDLKELCSVLVVLSSETAKTLADQRNAAERGADYQIETSLASSTHDRLQNEKDSAEKAINGDCSSANQDNIINPDNSNSEEANVPKGRPMSPGTLALMCDEKDTMFIESASPNGIVGNSCSTSSQMPYEQDLLEVYAEQEQIVLTKFRDCLDRLITFGKIKGKLIISDLDKLTIEL 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 38605507 38610179 + BLOR21812 Blo16g01025 72216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01025 537 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 75 524 - -
Blo16g01025 537 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 25 91 - -
Blo16g01025 537 Coils Coil 537 537 - -
Blo16g01025 537 MobiDBLite consensus disorder prediction 421 445 - -
Blo16g01025 537 MobiDBLite consensus disorder prediction 53 76 - -
Blo16g01025 537 MobiDBLite consensus disorder prediction 1 30 - -
Blo16g01025 537 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Blo16g01025 537 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 127 162 IPR005172 -
Blo16g01025 537 MobiDBLite consensus disorder prediction 402 452 - -
Blo16g01025 537 SMART CXC_2 125 165 IPR033467 -
Blo16g01025 537 SMART CXC_2 210 251 IPR033467 -
Blo16g01025 537 PANTHER TESMIN/TSO1-RELATED 75 524 IPR028307 -
Blo16g01025 537 PANTHER TESMIN/TSO1-RELATED 25 91 IPR028307 -
Blo16g01025 537 ProSiteProfiles CRC domain profile. 126 250 IPR005172 -
Blo16g01025 537 MobiDBLite consensus disorder prediction 78 92 - -
Blo16g01025 537 MobiDBLite consensus disorder prediction 49 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01025 - - - zju:107431760 722.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00513 Blo16g01025 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00229 Blo-Chr7:2846780 Blo16g01025 Blo-Chr16:38605507 3.25E-27 dispersed
Blo12g00335 Blo-Chr12:19105306 Blo16g01025 Blo-Chr16:38605507 2.54E-24 dispersed
Blo16g00722 Blo-Chr16:28037524 Blo16g01025 Blo-Chr16:38605507 1.33E-06 dispersed
Blo01g00513 Blo-Chr1:5647790 Blo16g01025 Blo-Chr16:38605507 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g00513 BCT 106 567 CPP Transcription Factor Family AT2G20110 57.0 1.0e-135 480.7
Blo16g01025 BCT 105 522 CPP Transcription Factor Family AT2G20110 61.2 3.7e-133 472.2
Blo01g00513 BCT 23 566 CPP Transcription Factor Family AT4G29000 55.7 7.1e-154 541.2
Blo16g01025 BCT 106 528 CPP Transcription Factor Family AT4G29000 62.4 7.1e-146 514.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13450 PF03638 TCR 2.80E-12 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01025 Blo_Chr16 FPKM 131.018051 139.235474 18.771721 18.439178 70.05262 75.818077 75.037727 19.507935 18.758112 20.694557